Inferring the kinetics of stochastic gene expression from single-cell RNA-sequencing data

by Kim, Jong Kyoung, Marioni, John C
Published 2013

bioWeb3D: an online webGL 3D data visualisation tool

by Pettit, Jean-Baptiste, Marioni, John C
Published 2013

Single Cell Genomics meeting in Stockholm: from single cells to cell types

by Scialdone, Antonio, Achim, Kaia, Marioni, John C
Published 2014

HDTD: analyzing multi-tissue gene expression data

by Touloumis, Anestis, Marioni, John C., Tavaré, Simon
Published 2016

BASiCS: Bayesian Analysis of Single-Cell Sequencing Data

by Vallejos, Catalina A., Marioni, John C., Richardson, Sylvia
Published 2015

Pooling across cells to normalize single-cell RNA sequencing data with many zero counts

by L. Lun, Aaron T., Bach, Karsten, Marioni, John C.
Published 2016

Beyond comparisons of means: understanding changes in gene expression at the single-cell level

by Vallejos, Catalina A., Richardson, Sylvia, Marioni, John C.
Published 2016

A step-by-step workflow for low-level analysis of single-cell RNA-seq data with Bioconductor

by Lun, Aaron T.L., McCarthy, Davis J., Marioni, John C.
Published 2016

Characterizing noise structure in single-cell RNA-seq distinguishes genuine from technical stochastic allelic expression

by Kim, Jong Kyoung, Kolodziejczyk, Aleksandra A., Illicic, Tomislav, Teichmann, Sarah A., Marioni, John C.
Published 2015

Corrigendum: Characterizing noise structure in single-cell RNA-seq distinguishes genuine from technical stochastic allelic expression

by Kim, Jong Kyoung, Kolodziejczyk, Aleksandra A., Ilicic, Tomislav, Teichmann, Sarah A., Marioni, John C.
Published 2016

Codon-Driven Translational Efficiency Is Stable across Diverse Mammalian Cell States

by Rudolph, Konrad L. M., Schmitt, Bianca M., Villar, Diego, White, Robert J., Marioni, John C., Kutter, Claudia, Odom, Duncan T.
Published 2016

Hierarchical deconstruction of mouse olfactory sensory neurons: from whole mucosa to single-cell RNA-seq

by Saraiva, Luis R., Ibarra-Soria, Ximena, Khan, Mona, Omura, Masayo, Scialdone, Antonio, Mombaerts, Peter, Marioni, John C., Logan, Darren W.
Published 2015

Regulatory Divergence of Transcript Isoforms in a Mammalian Model System

by Leigh-Brown, Sarah, Goncalves, Angela, Thybert, David, Stefflova, Klara, Watt, Stephen, Flicek, Paul, Brazma, Alvis, Marioni, John C., Odom, Duncan T.
Published 2015

Molecular and neuronal homology between the olfactory systems of zebrafish and mouse

by Saraiva, Luis R., Ahuja, Gaurav, Ivandic, Ivan, Syed, Adnan S., Marioni, John C., Korsching, Sigrun I., Logan, Darren W.
Published 2015

Resolving Early Mesoderm Diversification through Single Cell Expression Profiling

by Scialdone, Antonio, Tanaka, Yosuke, Jawaid, Wajid, Moignard, Victoria, Wilson, Nicola K., Macaulay, Iain C., Marioni, John C., Göttgens, Berthold
Published 2016

Cooperativity and Rapid Evolution of Cobound Transcription Factors in Closely Related Mammals

by Stefflova, Klara, Thybert, David, Wilson, Michael D., Streeter, Ian, Aleksic, Jelena, Karagianni, Panagiota, Brazma, Alvis, Adams, David J., Talianidis, Iannis, Marioni, John C., Flicek, Paul, Odom, Duncan T.
Published 2013

Genome-wide Bisulfite Sequencing in Zygotes Identifies Demethylation Targets and Maps the Contribution of TET3 Oxidation

by Peat, Julian R., Dean, Wendy, Clark, Stephen J., Krueger, Felix, Smallwood, Sébastien A., Ficz, Gabriella, Kim, Jong Kyoung, Marioni, John C., Hore, Timothy A., Reik, Wolf
Published 2014

Structure and evolutionary history of a large family of NLR proteins in the zebrafish

by Howe, Kerstin, Schiffer, Philipp H., Zielinski, Julia, Wiehe, Thomas, Laird, Gavin K., Marioni, John C., Soylemez, Onuralp, Kondrashov, Fyodor, Leptin, Maria
Published 2016

Heterogeneity in Oct4 and Sox2 Targets Biases Cell Fate in 4-Cell Mouse Embryos

by Goolam, Mubeen, Scialdone, Antonio, Graham, Sarah J.L., Macaulay, Iain C., Jedrusik, Agnieszka, Hupalowska, Anna, Voet, Thierry, Marioni, John C., Zernicka-Goetz, Magdalena
Published 2016

Regulation of constitutive and alternative mRNA splicing across the human transcriptome by PRPF8 is determined by 5′ splice site strength

by Wickramasinghe, Vihandha O., Gonzàlez-Porta, Mar, Perera, David, Bartolozzi, Arthur R., Sibley, Christopher R., Hallegger, Martina, Ule, Jernej, Marioni, John C., Venkitaraman, Ashok R.
Published 2015