Alu elements: at the crossroads between disease and evolution

by Ule, Jernej
Published 2013

Understanding splicing regulation through RNA splicing maps

by Witten, Joshua T., Ule, Jernej
Published 2011

'Oming in on RNA–protein interactions

by Rinn, John L, Ule, Jernej
Published 2014

CLIPing the brain: Studies of protein–RNA interactions important for neurodegenerative disorders☆☆☆

by Modic, Miha, Ule, Jernej, Sibley, Christopher R.
Published 2013

The greatest catch: big game fishing for mRNA-bound proteins

by Sibley, Christopher R, Attig, Jan, Ule, Jernej
Published 2012

What, where, and when: the importance of post-transcriptional regulation in the brain

by Kiebler, Michael A., Scheiffele, Peter, Ule, Jernej
Published 2013

Evolution of Nova-Dependent Splicing Regulation in the Brain

by Jelen, Nejc, Ule, Jernej, Živin, Marko, Darnell, Robert B
Published 2007

Orthogonal matrix factorization enables integrative analysis of multiple RNA binding proteins

by Stražar, Martin, Žitnik, Marinka, Zupan, Blaž, Ule, Jernej, Curk, Tomaž
Published 2016

Psip1/Ledgf p52 Binds Methylated Histone H3K36 and Splicing Factors and Contributes to the Regulation of Alternative Splicing

by Pradeepa, Madapura M., Sutherland, Heidi G., Ule, Jernej, Grimes, Graeme R., Bickmore, Wendy A.
Published 2012

Regulation of alternative splicing by the circadian clock and food related cues

by McGlincy, Nicholas J, Valomon, Amandine, Chesham, Johanna E, Maywood, Elizabeth S, Hastings, Michael H, Ule, Jernej
Published 2012

RNAmotifs: prediction of multivalent RNA motifs that control alternative splicing

by Cereda, Matteo, Pozzoli, Uberto, Rot, Gregor, Juvan, Peter, Schweitzer, Anthony, Clark, Tyson, Ule, Jernej
Published 2014

Analysis of CLIP and iCLIP methods for nucleotide-resolution studies of protein-RNA interactions

by Sugimoto, Yoichiro, König, Julian, Hussain, Shobbir, Zupan, Blaž, Curk, Tomaž, Frye, Michaela, Ule, Jernej
Published 2012

Splicing changes in SMA mouse motoneurons and SMN-depleted neuroblastoma cells: Evidence for involvement of splicing regulatory proteins

by Huo, Qing, Kayikci, Melis, Odermatt, Philipp, Meyer, Kathrin, Michels, Olivia, Saxena, Smita, Ule, Jernej, Schümperli, Daniel
Published 2015

iCLIP - Transcriptome-wide Mapping of Protein-RNA Interactions with Individual Nucleotide Resolution

by Konig, Julian, Zarnack, Kathi, Rot, Gregor, Curk, Tomaz, Kayikci, Melis, Zupan, Blaz, Turner, Daniel J., Luscombe, Nicholas M., Ule, Jernej
Published 2011

CELF4 Regulates Translation and Local Abundance of a Vast Set of mRNAs, Including Genes Associated with Regulation of Synaptic Function

by Wagnon, Jacy L., Briese, Michael, Sun, Wenzhi, Mahaffey, Connie L., Curk, Tomaž, Rot, Gregor, Ule, Jernej, Frankel, Wayne N.
Published 2012

Requirement of Heterogeneous Nuclear Ribonucleoprotein C for BRCA Gene Expression and Homologous Recombination

by Anantha, Rachel W., Alcivar, Allen L., Ma, Jianglin, Cai, Hong, Simhadri, Srilatha, Ule, Jernej, König, Julian, Xia, Bing
Published 2013

Perturbation of Chromatin Structure Globally Affects Localization and Recruitment of Splicing Factors

by Schor, Ignacio E., Llères, David, Risso, Guillermo J., Pawellek, Andrea, Ule, Jernej, Lamond, Angus I., Kornblihtt, Alberto R.
Published 2012

The RNA-binding landscapes of two SR proteins reveal unique functions and binding to diverse RNA classes

by Änkö, Minna-Liisa, Müller-McNicoll, Michaela, Brandl, Holger, Curk, Tomaz, Gorup, Crtomir, Henry, Ian, Ule, Jernej, Neugebauer, Karla M
Published 2012

Splicing repression allows the gradual emergence of new Alu-exons in primate evolution

by Attig, Jan, Ruiz de los Mozos, Igor, Haberman, Nejc, Wang, Zhen, Emmett, Warren, Zarnack, Kathi, König, Julian, Ule, Jernej
Published 2016

Intergenic Alu exonisation facilitates the evolution of tissue-specific transcript ends

by Tajnik, Mojca, Vigilante, Alessandra, Braun, Simon, Hänel, Heike, Luscombe, Nicholas M., Ule, Jernej, Zarnack, Kathi, König, Julian
Published 2015