De novo detection of differentially bound regions for ChIP-seq data using peaks and windows: controlling error rates correctly

by Lun, Aaron T.L., Smyth, Gordon K.
Published 2014

diffHic: a Bioconductor package to detect differential genomic interactions in Hi-C data

by Lun, Aaron T.L., Smyth, Gordon K.
Published 2015

From reads to regions: a Bioconductor workflow to detect differential binding in ChIP-seq data

by Lun, Aaron T. L., Smyth, Gordon K.
Published 2016

csaw: a Bioconductor package for differential binding analysis of ChIP-seq data using sliding windows

by Lun, Aaron T.L., Smyth, Gordon K.
Published 2016

Infrastructure for genomic interactions: Bioconductor classes for Hi-C, ChIA-PET and related experiments

by Lun, Aaron T. L., Perry, Malcolm, Ing-Simmons, Elizabeth
Published 2016

From reads to genes to pathways: differential expression analysis of RNA-Seq experiments using Rsubread and the edgeR quasi-likelihood pipeline

by Chen, Yunshun, Lun, Aaron T. L., Smyth, Gordon K.
Published 2016

A step-by-step workflow for low-level analysis of single-cell RNA-seq data with Bioconductor

by Lun, Aaron T.L., McCarthy, Davis J., Marioni, John C.
Published 2016

Transcriptome and H3K27 tri-methylation profiling of Ezh2-deficient lung epithelium

by Holik, Aliaksei Z., Galvis, Laura A., Lun, Aaron T.L., Ritchie, Matthew E., Asselin-Labat, Marie-Liesse
Published 2015

Repression of Igf1 expression by Ezh2 prevents basal cell differentiation in the developing lung

by Galvis, Laura A., Holik, Aliaksei Z., Short, Kieran M., Pasquet, Julie, Lun, Aaron T. L., Blewitt, Marnie E., Smyth, Ian M., Ritchie, Matthew E., Asselin-Labat, Marie-Liesse
Published 2015