A pipeline for RNA-seq data processing and quality assessment

by Goncalves, Angela, Tikhonov, Andrew, Brazma, Alvis, Kapushesky, Misha
Published 2011

Haplotype and isoform specific expression estimation using multi-mapping RNA-seq reads

by Turro, Ernest, Su, Shu-Yi, Gonçalves, Ângela, Coin, Lachlan JM, Richardson, Sylvia, Lewin, Alex
Published 2011

Fgf and Esrrb integrate epigenetic and transcriptional networks that regulate self-renewal of trophoblast stem cells

by Latos, Paulina A., Goncalves, Angela, Oxley, David, Mohammed, Hisham, Turro, Ernest, Hemberger, Myriam
Published 2015

Pol III binding in six mammalian genomes shows high conservation among amino acid isotypes, despite divergence in tRNA gene usage

by Kutter, Claudia, Brown, Gordon D., Gonçalves, Ângela, Wilson, Michael D., Watt, Stephen, Brazma, Alvis, White, Robert J., Odom, Duncan T.
Published 2011

Rapid Turnover of Long Noncoding RNAs and the Evolution of Gene Expression

by Kutter, Claudia, Watt, Stephen, Stefflova, Klara, Wilson, Michael D., Goncalves, Angela, Ponting, Chris P., Odom, Duncan T., Marques, Ana C.
Published 2012

Regulatory Divergence of Transcript Isoforms in a Mammalian Model System

by Leigh-Brown, Sarah, Goncalves, Angela, Thybert, David, Stefflova, Klara, Watt, Stephen, Flicek, Paul, Brazma, Alvis, Marioni, John C., Odom, Duncan T.
Published 2015

Waves of Retrotransposon Expansion Remodel Genome Organization and CTCF Binding in Multiple Mammalian Lineages

by Schmidt, Dominic, Schwalie, Petra C., Wilson, Michael D., Ballester, Benoit, Gonçalves, Ângela, Kutter, Claudia, Brown, Gordon D., Marshall, Aileen, Flicek, Paul, Odom, Duncan T.
Published 2012

Waves of Retrotransposon Expansion Remodel Genome Organization and CTCF Binding in Multiple Mammalian Lineages

by Schmidt, Dominic, Schwalie, Petra C., Wilson, Michael D., Ballester, Benoit, Gonçalves, Ângela, Kutter, Claudia, Brown, Gordon D., Marshall, Aileen, Flicek, Paul, Odom, Duncan T.
Published 2012

Multi-species, multi-transcription factor binding highlights conserved control of tissue-specific biological pathways

by Ballester, Benoit, Medina-Rivera, Alejandra, Schmidt, Dominic, Gonzàlez-Porta, Mar, Carlucci, Matthew, Chen, Xiaoting, Chessman, Kyle, Faure, Andre J, Funnell, Alister PW, Goncalves, Angela, Kutter, Claudia, Lukk, Margus, Menon, Suraj, McLaren, William M, Stefflova, Klara, Watt, Stephen, Weirauch, Matthew T, Crossley, Merlin, Marioni, John C, Odom, Duncan T, Flicek, Paul, Wilson, Michael D
Published 2014