An optimized microarray platform for assaying genomic variation in Plasmodium falciparum field populations

by Tan, John C, Miller, Becky A, Tan, Asako, Patel, Jigar J, Cheeseman, Ian H, Anderson, Tim JC, Manske, Magnus, Maslen, Gareth, Kwiatkowski, Dominic P, Ferdig, Michael T
Published 2011

The NGS WikiBook: a dynamic collaborative online training effort with long-term sustainability

by Li, Jing-Woei, Bolser, Dan, Manske, Magnus, Giorgi, Federico Manuel, Vyahhi, Nikolay, Usadel, Björn, Clavijo, Bernardo J., Chan, Ting-Fung, Wong, Nathalie, Zerbino, Daniel, Schneider, Maria Victoria
Published 2013

VarB: a variation browsing and analysis tool for variants derived from next-generation sequencing data

by Preston, Mark D., Manske, Magnus, Horner, Neil, Assefa, Samuel, Campino, Susana, Auburn, Sarah, Zongo, Issaka, Ouedraogo, Jean-Bosco, Nosten, Francois, Anderson, Tim, Clark, Taane G.
Published 2012

Adaptive introgression between Anopheles sibling species eliminates a major genomic island but not reproductive isolation

by Clarkson, Chris S., Weetman, David, Essandoh, John, Yawson, Alexander E., Maslen, Gareth, Manske, Magnus, Field, Stuart G., Webster, Mark, Antão, Tiago, MacInnis, Bronwyn, Kwiatkowski, Dominic, Donnelly, Martin J.
Published 2014

Characterization of Within-Host Plasmodium falciparum Diversity Using Next-Generation Sequence Data

by Auburn, Sarah, Campino, Susana, Miotto, Olivo, Djimde, Abdoulaye A., Zongo, Issaka, Manske, Magnus, Maslen, Gareth, Mangano, Valentina, Alcock, Daniel, MacInnis, Bronwyn, Rockett, Kirk A., Clark, Taane G., Doumbo, Ogobara K., Ouédraogo, Jean Bosco, Kwiatkowski, Dominic P.
Published 2012

Optimizing illumina next-generation sequencing library preparation for extremely at-biased genomes

by Oyola, Samuel O, Otto, Thomas D, Gu, Yong, Maslen, Gareth, Manske, Magnus, Campino, Susana, Turner, Daniel J, MacInnis, Bronwyn, Kwiatkowski, Dominic P, Swerdlow, Harold P, Quail, Michael A
Published 2012

Optimized Whole-Genome Amplification Strategy for Extremely AT-Biased Template

by Oyola, Samuel O., Manske, Magnus, Campino, Susana, Claessens, Antoine, Hamilton, William L., Kekre, Mihir, Drury, Eleanor, Mead, Daniel, Gu, Yong, Miles, Alistair, MacInnis, Bronwyn, Newbold, Chris, Berriman, Matthew, Kwiatkowski, Dominic P.
Published 2014

Drug-Resistant Genotypes and Multi-Clonality in Plasmodium falciparum Analysed by Direct Genome Sequencing from Peripheral Blood of Malaria Patients

by Robinson, Timothy, Campino, Susana G., Auburn, Sarah, Assefa, Samuel A., Polley, Spencer D., Manske, Magnus, MacInnis, Bronwyn, Rockett, Kirk A., Maslen, Gareth L., Sanders, Mandy, Quail, Michael A., Chiodini, Peter L., Kwiatkowski, Dominic P., Clark, Taane G., Sutherland, Colin J.
Published 2011

An Effective Method to Purify Plasmodium falciparum DNA Directly from Clinical Blood Samples for Whole Genome High-Throughput Sequencing

by Auburn, Sarah, Campino, Susana, Clark, Taane G., Djimde, Abdoulaye A., Zongo, Issaka, Pinches, Robert, Manske, Magnus, Mangano, Valentina, Alcock, Daniel, Anastasi, Elisa, Maslen, Gareth, MacInnis, Bronwyn, Rockett, Kirk, Modiano, David, Newbold, Christopher I., Doumbo, Ogobara K., Ouédraogo, Jean Bosco, Kwiatkowski, Dominic P.
Published 2011

Genome-wide screen identifies new candidate genes associated with artemisinin susceptibility in Plasmodium falciparum in Kenya

by Borrmann, Steffen, Straimer, Judith, Mwai, Leah, Abdi, Abdirahman, Rippert, Anja, Okombo, John, Muriithi, Steven, Sasi, Philip, Kortok, Moses Mosobo, Lowe, Brett, Campino, Susana, Assefa, Samuel, Auburn, Sarah, Manske, Magnus, Maslen, Gareth, Peshu, Norbert, Kwiatkowski, Dominic P., Marsh, Kevin, Nzila, Alexis, Clark, Taane G.
Published 2013

Effective Preparation of Plasmodium vivax Field Isolates for High-Throughput Whole Genome Sequencing

by Auburn, Sarah, Marfurt, Jutta, Maslen, Gareth, Campino, Susana, Ruano Rubio, Valentin, Manske, Magnus, MacHunter, Barbara, Kenangalem, Enny, Noviyanti, Rintis, Trianty, Leily, Sebayang, Boni, Wirjanata, Grennady, Sriprawat, Kanlaya, Alcock, Daniel, MacInnis, Bronwyn, Miotto, Olivo, Clark, Taane G., Russell, Bruce, Anstey, Nicholas M., Nosten, François, Kwiatkowski, Dominic P., Price, Ric N.
Published 2013

Population Genomic Scan for Candidate Signatures of Balancing Selection to Guide Antigen Characterization in Malaria Parasites

by Amambua-Ngwa, Alfred, Tetteh, Kevin K. A., Manske, Magnus, Gomez-Escobar, Natalia, Stewart, Lindsay B., Deerhake, M. Elizabeth, Cheeseman, Ian H., Newbold, Christopher I., Holder, Anthony A., Knuepfer, Ellen, Janha, Omar, Jallow, Muminatou, Campino, Susana, MacInnis, Bronwyn, Kwiatkowski, Dominic P., Conway, David J.
Published 2012

A Genome Wide Association Study of Plasmodium falciparum Susceptibility to 22 Antimalarial Drugs in Kenya

by Wendler, Jason P., Okombo, John, Amato, Roberto, Miotto, Olivo, Kiara, Steven M., Mwai, Leah, Pole, Lewa, O'Brien, John, Manske, Magnus, Alcock, Dan, Drury, Eleanor, Sanders, Mandy, Oyola, Samuel O., Malangone, Cinzia, Jyothi, Dushyanth, Miles, Alistair, Rockett, Kirk A., MacInnis, Bronwyn L., Marsh, Kevin, Bejon, Philip, Nzila, Alexis, Kwiatkowski, Dominic P.
Published 2014

Whole genome sequencing of Plasmodium falciparum from dried blood spots using selective whole genome amplification

by Oyola, Samuel O., Ariani, Cristina V., Hamilton, William L., Kekre, Mihir, Amenga-Etego, Lucas N., Ghansah, Anita, Rutledge, Gavin G., Redmond, Seth, Manske, Magnus, Jyothi, Dushyanth, Jacob, Chris G., Otto, Thomas D., Rockett, Kirk, Newbold, Chris I., Berriman, Matthew, Kwiatkowski, Dominic P.
Published 2016

Estimating Geographical Variation in the Risk of Zoonotic Plasmodium knowlesi Infection in Countries Eliminating Malaria

by Shearer, Freya M., Huang, Zhi, Weiss, Daniel J., Wiebe, Antoinette, Gibson, Harry S., Battle, Katherine E., Pigott, David M., Brady, Oliver J., Putaporntip, Chaturong, Jongwutiwes, Somchai, Lau, Yee Ling, Manske, Magnus, Amato, Roberto, Elyazar, Iqbal R. F., Vythilingam, Indra, Bhatt, Samir, Gething, Peter W., Singh, Balbir, Golding, Nick, Hay, Simon I., Moyes, Catherine L.
Published 2016

Genomic analysis of local variation and recent evolution in Plasmodium vivax

by Pearson, Richard D, Amato, Roberto, Auburn, Sarah, Miotto, Olivo, Almagro-Garcia, Jacob, Amaratunga, Chanaki, Suon, Seila, Mao, Sivanna, Noviyanti, Rintis, Trimarsanto, Hidayat, Marfurt, Jutta, Anstey, Nicholas M, William, Timothy, Boni, Maciej F, Dolecek, Christiane, Hien, Tinh Tran, White, Nicholas J, Michon, Pascal, Siba, Peter, Tavul, Livingstone, Harrison, Gabrielle, Barry, Alyssa, Mueller, Ivo, Ferreira, Marcelo U, Karunaweera, Nadira, Randrianarivelojosia, Milijaona, Gao, Qi, Hubbart, Christina, Hart, Lee, Jeffery, Ben, Drury, Eleanor, Mead, Daniel, Kekre, Mihir, Campino, Susana, Manske, Magnus, Cornelius, Victoria J, MacInnis, Bronwyn, Rockett, Kirk A, Miles, Alistair, Rayner, Julian C, Fairhurst, Rick M, Nosten, Francois, Price, Ric N, Kwiatkowski, Dominic P
Published 2016

Analysis of Plasmodium falciparum diversity in natural infections by deep sequencing

by Manske, Magnus, Miotto, Olivo, Campino, Susana, Auburn, Sarah, Almagro-Garcia, Jacob, Maslen, Gareth, O’Brien, Jack, Djimde, Abdoulaye, Doumbo, Ogobara, Zongo, Issaka, Ouedraogo, Jean-Bosco, Michon, Pascal, Mueller, Ivo, Siba, Peter, Nzila, Alexis, Borrmann, Steffen, Kiara, Steven M., Marsh, Kevin, Jiang, Hongying, Su, Xin-Zhuan, Amaratunga, Chanaki, Fairhurst, Rick, Socheat, Duong, Nosten, Francois, Imwong, Mallika, White, Nicholas J., Sanders, Mandy, Anastasi, Elisa, Alcock, Dan, Drury, Eleanor, Oyola, Samuel, Quail, Michael A., Turner, Daniel J., Rubio, Valentin Ruano, Jyothi, Dushyanth, Amenga-Etego, Lucas, Hubbart, Christina, Jeffreys, Anna, Rowlands, Kate, Sutherland, Colin, Roper, Cally, Mangano, Valentina, Modiano, David, Tan, John C., Ferdig, Michael T., Amambua-Ngwa, Alfred, Conway, David J., Takala-Harrison, Shannon, Plowe, Christopher V., Rayner, Julian C., Rockett, Kirk A., Clark, Taane G., Newbold, Chris I., Berriman, Matthew, MacInnis, Bronwyn, Kwiatkowski, Dominic P.
Published 2012

Multiple populations of artemisinin-resistant Plasmodium falciparum in Cambodia

by Miotto, Olivo, Almagro-Garcia, Jacob, Manske, Magnus, MacInnis, Bronwyn, Campino, Susana, Rockett, Kirk A, Amaratunga, Chanaki, Lim, Pharath, Suon, Seila, Sreng, Sokunthea, Anderson, Jennifer M, Duong, Socheat, Nguon, Chea, Chuor, Char Meng, Saunders, David, Se, Youry, Lon, Chantap, Fukuda, Mark M, Amenga-Etego, Lucas, Hodgson, Abraham VO, Asoala, Victor, Imwong, Mallika, Takala-Harrison, Shannon, Nosten, Francois, Su, Xin-zhuan, Ringwald, Pascal, Ariey, Frédéric, Dolecek, Christiane, Hien, Tran Tinh, Boni, Maciej F, Thai, Cao Quang, Amambua-Ngwa, Alfred, Conway, David J, Djimdé, Abdoulaye A, Doumbo, Ogobara K, Zongo, Issaka, Ouedraogo, Jean-Bosco, Alcock, Daniel, Drury, Eleanor, Auburn, Sarah, Koch, Oliver, Sanders, Mandy, Hubbart, Christina, Maslen, Gareth, Ruano-Rubio, Valentin, Jyothi, Dushyanth, Miles, Alistair, O’Brien, John, Gamble, Chris, Oyola, Samuel O, Rayner, Julian C, Newbold, Chris I, Berriman, Matthew, Spencer, Chris CA, McVean, Gilean, Day, Nicholas P, White, Nicholas J, Bethell, Delia, Dondorp, Arjen M, Plowe, Christopher V, Fairhurst, Rick M, Kwiatkowski, Dominic P
Published 2013