Genes involved in host–parasite interactions can be revealed by their correlated expression

by Reid, Adam James, Berriman, Matthew
Published 2013

TSIDER1, a short and non-autonomous Salivarian trypanosome-specific retroposon related to the ingi6 subclade

by Bringaud, Frédéric, Berriman, Matthew, Hertz-Fowler, Christiane
Published 2011

RATT: Rapid Annotation Transfer Tool

by Otto, Thomas D., Dillon, Gary P., Degrave, Wim S., Berriman, Matthew
Published 2011

GOtcha: a new method for prediction of protein function assessed by the annotation of seven genomes

by Martin, David MA, Berriman, Matthew, Barton, Geoffrey J
Published 2004

Comparative Study of Transcriptome Profiles of Mechanical- and Skin-Transformed Schistosoma mansoni Schistosomula

by Protasio, Anna V., Dunne, David W., Berriman, Matthew
Published 2013

A comprehensive evaluation of assembly scaffolding tools

by Hunt, Martin, Newbold, Chris, Berriman, Matthew, Otto, Thomas D
Published 2014

Artemis: an integrated platform for visualization and analysis of high-throughput sequence-based experimental data

by Carver, Tim, Harris, Simon R., Berriman, Matthew, Parkhill, Julian, McQuillan, Jacqueline A.
Published 2012

Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel

by Winter, Alan D, Weir, William, Hunt, Martin, Berriman, Matthew, Gilleard, John S, Devaney, Eileen, Britton, Collette
Published 2012

REAPR: a universal tool for genome assembly evaluation

by Hunt, Martin, Kikuchi, Taisei, Sanders, Mandy, Newbold, Chris, Berriman, Matthew, Otto, Thomas D
Published 2013

RNAseq Analysis of the Parasitic Nematode Strongyloides stercoralis Reveals Divergent Regulation of Canonical Dauer Pathways

by Stoltzfus, Jonathan D., Minot, Samuel, Berriman, Matthew, Nolan, Thomas J., Lok, James B.
Published 2012

BamView: visualizing and interpretation of next-generation sequencing read alignments

by Carver, Tim, Harris, Simon R., Otto, Thomas D., Berriman, Matthew, Parkhill, Julian, McQuillan, Jacqueline A.
Published 2013

Summarizing Specific Profiles in Illumina Sequencing from Whole-Genome Amplified DNA

by Tsai, Isheng J., Hunt, Martin, Holroyd, Nancy, Huckvale, Thomas, Berriman, Matthew, Kikuchi, Taisei
Published 2014

Schistosome sex matters: a deep view into gonad-specific and pairing-dependent transcriptomes reveals a complex gender interplay

by Lu, Zhigang, Sessler, Florian, Holroyd, Nancy, Hahnel, Steffen, Quack, Thomas, Berriman, Matthew, Grevelding, Christoph G.
Published 2016

Dataset for a Dugesia japonica de novo transcriptome assembly, utilized for defining the voltage-gated like ion channel superfamily

by Chan, John D., Zhang, Dan, Liu, Xiaolong, Zarowiecki, Magdalena Z., Berriman, Matthew, Marchant, Jonathan S.
Published 2016

Nitroheterocyclic drug resistance mechanisms in Trypanosoma brucei

by Wyllie, Susan, Foth, Bernardo J., Kelner, Anna, Sokolova, Antoaneta Y., Berriman, Matthew, Fairlamb, Alan H.
Published 2016

International Glossina Genome Initiative 2004–2014: A Driver for Post-Genomic Era Research on the African Continent

by Christoffels, Alan, Masiga, Dan, Berriman, Matthew, Lehane, Mike, Touré, Yeya, Aksoy, Serap
Published 2014

Plasmodium falciparum Variant Surface Antigen Expression Patterns during Malaria

by Bull, Peter C, Berriman, Matthew, Kyes, Sue, Quail, Michael A, Hall, Neil, Kortok, Moses M, Marsh, Kevin, Newbold, Chris I
Published 2005

Differential var gene expression in the organs of patients dying of falciparum malaria

by Montgomery, Jacqui, Mphande, Fingani A, Berriman, Matthew, Pain, Arnab, Rogerson, Stephen J, Taylor, Terrie E, Molyneux, Malcolm E, Craig, Alister
Published 2007

Using RNA-seq to determine the transcriptional landscape and the hypoxic response of the pathogenic yeast Candida parapsilosis

by Guida, Alessandro, Lindstädt, Claudia, Maguire, Sarah L, Ding, Chen, Higgins, Desmond G, Corton, Nicola J, Berriman, Matthew, Butler, Geraldine
Published 2011

Differences between Trypanosoma brucei gambiense Groups 1 and 2 in Their Resistance to Killing by Trypanolytic Factor 1

by Capewell, Paul, Veitch, Nicola J., Turner, C. Michael R., Raper, Jayne, Berriman, Matthew, Hajduk, Stephen L., MacLeod, Annette
Published 2011