On the Performance of Multiple Imputation Based on Chained Equations in Tackling Missing Data of the African α3.7-Globin Deletion in a Malaria Association Study

by Sepúlveda, Nuno, Manjurano, Alphaxard, Drakeley, Chris, Clark, Taane G
Published 2014

estMOI: estimating multiplicity of infection using parasite deep sequencing data

by Assefa, Samuel A., Preston, Mark D., Campino, Susana, Ocholla, Harold, Sutherland, Colin J., Clark, Taane G.
Published 2014

Cathepsin-L Can Resist Lysis by Human Serum in Trypanosoma brucei brucei

by Alsford, Sam, Currier, Rachel B., Guerra-Assunção, José Afonso, Clark, Taane G., Horn, David
Published 2014

Imputation-Based Population Genetics Analysis of Plasmodium falciparum Malaria Parasites

by Samad, Hanif, Coll, Francesc, Preston, Mark D., Ocholla, Harold, Fairhurst, Rick M., Clark, Taane G.
Published 2015

SVAMP: sequence variation analysis, maps and phylogeny

by Naeem, Raeece, Hidayah, Lailatul, Preston, Mark D., Clark, Taane G., Pain, Arnab
Published 2014

A Poisson hierarchical modelling approach to detecting copy number variation in sequence coverage data

by Sepúlveda, Nuno, Campino, Susana G, Assefa, Samuel A, Sutherland, Colin J, Pain5, Arnab, Clark, Taane G
Published 2013

SpolPred: rapid and accurate prediction of Mycobacterium tuberculosis spoligotypes from short genomic sequences

by Coll, Francesc, Mallard, Kim, Preston, Mark D., Bentley, Stephen, Parkhill, Julian, McNerney, Ruth, Martin, Nigel, Clark, Taane G.
Published 2012

Variation in Complexity of Infection and Transmission Stability between Neighbouring Populations of Plasmodium vivax in Southern Ethiopia

by Getachew, Sisay, To, Sheren, Trimarsanto, Hidayat, Thriemer, Kamala, Clark, Taane G., Petros, Beyene, Aseffa, Abraham, Price, Ric N., Auburn, Sarah
Published 2015

Investigation of Host Candidate Malaria-Associated Risk/Protective SNPs in a Brazilian Amazonian Population

by da Silva Santos, Simone, Clark, Taane G., Campino, Susana, Suarez-Mutis, Martha Cecília, Rockett, Kirk A., Kwiatkowski, Dominic P., Fernandes, Octavio
Published 2012

Association of sub-microscopic malaria parasite carriage with transmission intensity in north-eastern Tanzania

by Manjurano, Alphaxard, Okell, Lucy, Lukindo, Tedson, Reyburn, Hugh, Olomi, Raimos, Roper, Cally, Clark, Taane G, Joseph, Sarah, Riley, Eleanor M, Drakeley, Chris
Published 2011

The genetic risk of acute seizures in African children with falciparum malaria

by Kariuki, Symon M, Rockett, Kirk, Clark, Taane G, Reyburn, Hugh, Agbenyega, Tsiri, Taylor, Terrie E, Birbeck, Gretchen L, Williams, Thomas N, Newton, Charles R J C
Published 2013

VarB: a variation browsing and analysis tool for variants derived from next-generation sequencing data

by Preston, Mark D., Manske, Magnus, Horner, Neil, Assefa, Samuel, Campino, Susana, Auburn, Sarah, Zongo, Issaka, Ouedraogo, Jean-Bosco, Nosten, Francois, Anderson, Tim, Clark, Taane G.
Published 2012

Recombinations in Staphylococcal Cassette Chromosome mec Elements Compromise the Molecular Detection of Methicillin Resistance in Staphylococcus aureus

by Hill-Cawthorne, Grant A., Hudson, Lyndsey O., El Ghany, Moataz Fouad Abd, Piepenburg, Olaf, Nair, Mridul, Dodgson, Andrew, Forrest, Matthew S., Clark, Taane G., Pain, Arnab
Published 2014

Association of candidate gene polymorphisms and TGF-beta/IL-10 levels with malaria in three regions of Cameroon: a case–control study

by Apinjoh, Tobias O, Anchang-Kimbi, Judith K, Njua-Yafi, Clarisse, Ngwai, André N, Mugri, Regina N, Clark, Taane G, Rockett, Kirk A, Kwiatkowski, Dominic P, Achidi, Eric A
Published 2014

USP38, FREM3, SDC1, DDC, and LOC727982 Gene Polymorphisms and Differential Susceptibility to Severe Malaria in Tanzania

by Manjurano, Alphaxard, Sepúlveda, Nuno, Nadjm, Behzad, Mtove, George, Wangai, Hannah, Maxwell, Caroline, Olomi, Raimos, Reyburn, Hugh, Drakeley, Christopher J., Riley, Eleanor M., Clark, Taane G.
Published 2015

PhyTB: Phylogenetic tree visualisation and sample positioning for M. tuberculosis

by Benavente, Ernest D, Coll, Francesc, Furnham, Nick, McNerney, Ruth, Glynn, Judith R, Campino, Susana, Pain, Arnab, Mohareb, Fady R, Clark, Taane G
Published 2015

Further Evidence of Increasing Diversity of Plasmodium vivax in the Republic of Korea in Recent Years

by Kim, Jung-Yeon, Goo, Youn-Kyoung, Zo, Young-Gun, Ji, So-Young, Trimarsanto, Hidayat, To, Sheren, Clark, Taane G., Price, Ric N., Auburn, Sarah
Published 2016

A robust SNP barcode for typing Mycobacterium tuberculosis complex strains

by Coll, Francesc, McNerney, Ruth, Guerra-Assunção, José Afonso, Glynn, Judith R., Perdigão, João, Viveiros, Miguel, Portugal, Isabel, Pain, Arnab, Martin, Nigel, Clark, Taane G.
Published 2014

Whole Genome Sequencing Based Characterization of Extensively Drug-Resistant Mycobacterium tuberculosis Isolates from Pakistan

by Ali, Asho, Hasan, Zahra, McNerney, Ruth, Mallard, Kim, Hill-Cawthorne, Grant, Coll, Francesc, Nair, Mridul, Pain, Arnab, Clark, Taane G., Hasan, Rumina
Published 2015

African Glucose-6-Phosphate Dehydrogenase Alleles Associated with Protection from Severe Malaria in Heterozygous Females in Tanzania

by Manjurano, Alphaxard, Sepulveda, Nuno, Nadjm, Behzad, Mtove, George, Wangai, Hannah, Maxwell, Caroline, Olomi, Raimos, Reyburn, Hugh, Riley, Eleanor M., Drakeley, Christopher J., Clark, Taane G.
Published 2015