RCircos: an R package for Circos 2D track plots

by Zhang, Hongen, Meltzer, Paul, Davis, Sean
Published 2013

caOmicsV: an R package for visualizing multidimensional cancer genomic data

by Zhang, Hongen, Meltzer, Paul S., Davis, Sean R.
Published 2016

SRAdb: query and use public next-generation sequencing data from within R

by Zhu, Yuelin, Stephens, Robert M, Meltzer, Paul S, Davis, Sean R
Published 2013

On the Selective Packaging of Genomic RNA by HIV-1

by Comas-Garcia, Mauricio, Davis, Sean R., Rein, Alan
Published 2016

Whole Genome and Transcriptome Sequencing of a B3 Thymoma

by Petrini, Iacopo, Rajan, Arun, Pham, Trung, Voeller, Donna, Davis, Sean, Gao, James, Wang, Yisong, Giaccone, Giuseppe
Published 2013

The Bioconductor channel in F1000Research

by Huber, Wolfgang, Carey, Vincent, Davis, Sean, Hansen, Kasper Daniel, Morgan, Martin
Published 2016

Chlorhexidine hexametaphosphate nanoparticles as a novel antimicrobial coating for dental implants

by Wood, Natalie J., Jenkinson, Howard F., Davis, Sean A., Mann, Stephen, O’Sullivan, Dominic J., Barbour, Michele E.
Published 2015

Genome-Wide Analysis of Menin Binding Provides Insights into MEN1 Tumorigenesis

by Scacheri, Peter C, Davis, Sean, Odom, Duncan T, Crawford, Gregory E, Perkins, Stacie, Halawi, Mohamad J, Agarwal, Sunita K, Marx, Stephen J, Spiegel, Allen M, Meltzer, Paul S, Collins, Francis S
Published 2006

Detection of Novel Amplicons in Prostate Cancer by Comprehensive Genomic Profiling of Prostate Cancer Cell Lines Using Oligonucleotide-Based ArrayCGH

by Kamradt, Joern, Jung, Volker, Wahrheit, Kerstin, Tolosi, Laura, Rahnenfuehrer, Joerg, Schilling, Martin, Walker, Robert, Davis, Sean, Stoeckle, Michael, Meltzer, Paul, Wullich, Bernd
Published 2007

Preferential Localization of Human Origins of DNA Replication at the 5′-Ends of Expressed Genes and at Evolutionarily Conserved DNA Sequences

by Valenzuela, Manuel S., Chen, Yidong, Davis, Sean, Yang, Fan, Walker, Robert L., Bilke, Sven, Lueders, John, Martin, Melvenia M., Aladjem, Mirit I., Massion, Pierre P., Meltzer, Paul S.
Published 2011

Comparative exome sequencing of metastatic lesions provides insights into the mutational progression of melanoma

by Gartner, Jared J, Davis, Sean, Wei, Xiaomu, Lin, Jimmy C, Trivedi, Niraj S, Teer, Jamie K, Meltzer, Paul S, Rosenberg, Steven A, Samuels, Yardena
Published 2012

High prevalence of MAP2K1 mutations in variant and IGHV4-34 expressing hairy-cell leukemia

by Waterfall, Joshua J., Arons, Evgeny, Walker, Robert L., Pineda, Marbin, Roth, Laura, Killian, J. Keith, Abaan, Ogan D., Davis, Sean R., Kreitman, Robert J., Meltzer, Paul S.
Published 2013

Interferon-γ links UV to melanocyte activation and promotes melanomagenesis

by Zaidi, M. Raza, Davis, Sean, Noonan, Frances P., Graff-Cherry, Cari, Hawley, Teresa S., Walker, Robert L., Feigenbaum, Lionel, Fuchs, Elaine, Lyakh, Lyudmila, Young, Howard A., Hornyak, Thomas J., Arnheiter, Heinz, Trinchieri, Giorgio, Meltzer, Paul S., De Fabo, Edward C., Merlino, Glenn
Published 2011

NCBI GEO: archive for functional genomics data sets—update

by Barrett, Tanya, Wilhite, Stephen E., Ledoux, Pierre, Evangelista, Carlos, Kim, Irene F., Tomashevsky, Maxim, Marshall, Kimberly A., Phillippy, Katherine H., Sherman, Patti M., Holko, Michelle, Yefanov, Andrey, Lee, Hyeseung, Zhang, Naigong, Robertson, Cynthia L., Serova, Nadezhda, Davis, Sean, Soboleva, Alexandra
Published 2013

Stretch-Enhancers Delineate Disease-Associated Regulatory Nodes in T Cells

by Vahedi, Golnaz, Kanno, Yuka, Furumoto, Yasuko, Jiang, Kan, Parker, Stephen C., Erdos, Michael, Davis, Sean R., Roychoudhuri, Rahul, Restifo, Nicholas P., Gadina, Massimo, Tang, Zhonghui, Ruan, Yijun, Collins, Francis S., Sartorelli, Vittorio, O’Shea, John J.
Published 2015

Dual inhibition of HDAC and EGFR signaling with CUDC-101 induces potent suppression of tumor growth and metastasis in anaplastic thyroid cancer

by Zhang, Lisa, Zhang, Yaqin, Mehta, Amit, Boufraqech, Myriem, Davis, Sean, Wang, Jing, Tian, Ze, Yu, Zhiya, Boxer, Matthew B., Kiefer, Jeffrey A., Copland, John A., Smallridge, Robert C., Li, Zhuyin, Shen, Min, Kebebew, Electron
Published 2015

Whole Genome Sequencing of Newly Established Pancreatic Cancer Lines Identifies Novel Somatic Mutation (c.2587G>A) in Axon Guidance Receptor Plexin A1 as Enhancer of Proliferation...

by Sorber, Rebecca, Teper, Yaroslav, Abisoye-Ogunniyan, Abisola, Waterfall, Joshua J., Davis, Sean, Killian, J. Keith, Pineda, Marbin, Ray, Satyajit, McCord, Matt R., Pflicke, Holger, Burkett, Sandra Sczerba, Meltzer, Paul S., Rudloff, Udo
Published 2016

Characterization of Genomic Alterations in Radiation-Associated Breast Cancer among Childhood Cancer Survivors, Using Comparative Genomic Hybridization (CGH) Arrays

by Yang, Xiaohong R., Killian, J. Keith, Hammond, Sue, Burke, Laura S., Bennett, Hunter, Wang, Yonghong, Davis, Sean R., Strong, Louise C., Neglia, Joseph, Stovall, Marilyn, Weathers, Rita E., Robison, Leslie L., Bhatia, Smita, Mabuchi, Kiyohiko, Inskip, Peter D., Meltzer, Paul
Published 2015

NCI-60 Whole Exome Sequencing and Pharmacological CellMiner Analyses

by Reinhold, William C., Varma, Sudhir, Sousa, Fabricio, Sunshine, Margot, Abaan, Ogan D., Davis, Sean R., Reinhold, Spencer W., Kohn, Kurt W., Morris, Joel, Meltzer, Paul S., Doroshow, James H., Pommier, Yves
Published 2014

Public data and open source tools for multi-assay genomic investigation of disease

by Kannan, Lavanya, Ramos, Marcel, Re, Angela, El-Hachem, Nehme, Safikhani, Zhaleh, Gendoo, Deena M.A., Davis, Sean, Gomez-Cabrero, David, Castelo, Robert, Hansen, Kasper D., Carey, Vincent J., Morgan, Martin, Culhane, Aedín C., Haibe-Kains, Benjamin, Waldron, Levi
Published 2016