Control of Gene Expression by RNA Binding Protein Action on Alternative Translation Initiation Sites

by Re, Angela, Waldron, Levi, Quattrone, Alessandro
Published 2016

Report on emerging technologies for translational bioinformatics: a symposium on gene expression profiling for archival tissues

by Waldron, Levi, Simpson, Peter, Parmigiani, Giovanni, Huttenhower, Curtis
Published 2012

Metagenomic biomarker discovery and explanation

by Segata, Nicola, Izard, Jacques, Waldron, Levi, Gevers, Dirk, Miropolsky, Larisa, Garrett, Wendy S, Huttenhower, Curtis
Published 2011

The Murine Caecal MicroRNA Signature Depends on the Presence of the Endogenous Microbiota

by Singh, Natasha, Shirdel, Elize A., Waldron, Levi, Zhang, Regan-Heng, Jurisica, Igor, Comelli, Elena M.
Published 2011

Optimized application of penalized regression methods to diverse genomic data

by Waldron, Levi, Pintilie, Melania, Tsao, Ming-Sound, Shepherd, Frances A., Huttenhower, Curtis, Jurisica, Igor
Published 2011

Metagenomic microbial community profiling using unique clade-specific marker genes

by Segata, Nicola, Waldron, Levi, Ballarini, Annalisa, Narasimhan, Vagheesh, Jousson, Olivier, Huttenhower, Curtis
Published 2012

Cross-study validation for the assessment of prediction algorithms

by Bernau, Christoph, Riester, Markus, Boulesteix, Anne-Laure, Parmigiani, Giovanni, Huttenhower, Curtis, Waldron, Levi, Trippa, Lorenzo
Published 2014

Machine Learning Meta-analysis of Large Metagenomic Datasets: Tools and Biological Insights

by Pasolli, Edoardo, Truong, Duy Tin, Malik, Faizan, Waldron, Levi, Segata, Nicola
Published 2016

A Guide to Enterotypes across the Human Body: Meta-Analysis of Microbial Community Structures in Human Microbiome Datasets

by Koren, Omry, Knights, Dan, Gonzalez, Antonio, Waldron, Levi, Segata, Nicola, Knight, Rob, Huttenhower, Curtis, Ley, Ruth E.
Published 2013

Composition of the adult digestive tract bacterial microbiome based on seven mouth surfaces, tonsils, throat and stool samples

by Segata, Nicola, Haake, Susan Kinder, Mannon, Peter, Lemon, Katherine P, Waldron, Levi, Gevers, Dirk, Huttenhower, Curtis, Izard, Jacques
Published 2012

mRNA transcript quantification in archival samples using multiplexed, color-coded probes

by Reis, Patricia P, Waldron, Levi, Goswami, Rashmi S, Xu, Wei, Xuan, Yali, Perez-Ordonez, Bayardo, Gullane, Patrick, Irish, Jonathan, Jurisica, Igor, Kamel-Reid, Suzanne
Published 2011

curatedOvarianData: clinically annotated data for the ovarian cancer transcriptome

by Ganzfried, Benjamin Frederick, Riester, Markus, Haibe-Kains, Benjamin, Risch, Thomas, Tyekucheva, Svitlana, Jazic, Ina, Wang, Xin Victoria, Ahmadifar, Mahnaz, Birrer, Michael J., Parmigiani, Giovanni, Huttenhower, Curtis, Waldron, Levi
Published 2013

Associations between host gene expression, the mucosal microbiome, and clinical outcome in the pelvic pouch of patients with inflammatory bowel disease

by Morgan, Xochitl C, Kabakchiev, Boyko, Waldron, Levi, Tyler, Andrea D, Tickle, Timothy L, Milgrom, Raquel, Stempak, Joanne M, Gevers, Dirk, Xavier, Ramnik J, Silverberg, Mark S, Huttenhower, Curtis
Published 2015

A reproducible approach to high-throughput biological data acquisition and integration

by Börnigen, Daniela, Moon, Yo Sup, Rahnavard, Gholamali, Waldron, Levi, McIver, Lauren, Shafquat, Afrah, Franzosa, Eric A., Miropolsky, Larissa, Sweeney, Christopher, Morgan, Xochitl C., Garrett, Wendy S., Huttenhower, Curtis
Published 2015

CellMapper: rapid and accurate inference of gene expression in difficult-to-isolate cell types

by Nelms, Bradlee D., Waldron, Levi, Barrera, Luis A., Weflen, Andrew W., Goettel, Jeremy A., Guo, Guoji, Montgomery, Robert K., Neutra, Marian R., Breault, David T., Snapper, Scott B., Orkin, Stuart H., Bulyk, Martha L., Huttenhower, Curtis, Lencer, Wayne I.
Published 2016

Public data and open source tools for multi-assay genomic investigation of disease

by Kannan, Lavanya, Ramos, Marcel, Re, Angela, El-Hachem, Nehme, Safikhani, Zhaleh, Gendoo, Deena M.A., Davis, Sean, Gomez-Cabrero, David, Castelo, Robert, Hansen, Kasper D., Carey, Vincent J., Morgan, Martin, Culhane, Aedín C., Haibe-Kains, Benjamin, Waldron, Levi
Published 2016

A gene signature in histologically normal surgical margins is predictive of oral carcinoma recurrence

by Reis, Patricia P, Waldron, Levi, Perez-Ordonez, Bayardo, Pintilie, Melania, Galloni, Natalie Naranjo, Xuan, Yali, Cervigne, Nilva K, Warner, Giles C, Makitie, Antti A, Simpson, Colleen, Goldstein, David, Brown, Dale, Gilbert, Ralph, Gullane, Patrick, Irish, Jonathan, Jurisica, Igor, Kamel-Reid, Suzanne
Published 2011

Microbial community function and biomarker discovery in the human microbiome

by Segata, Nicola, Abubucker, Sahar, Goll, Johannes, Schubert, Alyxandria M, Izard, Jacques, Cantarel, Brandi L, Rodriguez-Mueller, Beltran, Waldron, Levi, Zucker, Jeremy, Thiagarajan, Mathangi, Henrissat, Bernard, White, Owen, Kelley, Scott T, Methé, Barbara, Schloss, Patrick D, Garrett, Wendy S, Gevers, Dirk, Mitreva, Makedonka, Huttenhower, Curtis
Published 2011