F-Seq: a feature density estimator for high-throughput sequence tags

by Boyle, Alan P., Guinney, Justin, Crawford, Gregory E., Furey, Terrence S.
Published 2008

HDAC inhibitors cause site-specific chromatin remodeling at PU.1-bound enhancers in K562 cells

by Frank, Christopher L., Manandhar, Dinesh, Gordân, Raluca, Crawford, Gregory E.
Published 2016

A complex intronic enhancer regulates expression of the CFTR gene by direct interaction with the promoter

by Ott, Christopher J, Suszko, Magdalena, Blackledge, Neil P, Wright, Jane E, Crawford, Gregory E, Harris, Ann
Published 2009

Explicit DNase sequence bias modeling enables high-resolution transcription factor footprint detection

by Yardımcı, Galip Gürkan, Frank, Christopher L., Crawford, Gregory E., Ohler, Uwe
Published 2014

Assembly of the Dystrophin-Associated Protein Complex Does Not Require the Dystrophin Cooh-Terminal Domain

by Crawford, Gregory E., Faulkner, John A., Crosbie, Rachelle H., Campbell, Kevin P., Froehner, Stanley C., Chamberlain, Jeffrey S.
Published 2000

Notch signaling genes: Myogenic DNA hypomethylation and 5-hydroxymethylcytosine

by Terragni, Jolyon, Zhang, Guoqiang, Sun, Zhiyi, Pradhan, Sriharsa, Song, Lingyun, Crawford, Gregory E, Lacey, Michelle, Ehrlich, Melanie
Published 2014

Interactions of Chromatin Context, Binding Site Sequence Content, and Sequence Evolution in Stress-Induced p53 Occupancy and Transactivation

by Su, Dan, Wang, Xuting, Campbell, Michelle R., Song, Lingyun, Safi, Alexias, Crawford, Gregory E., Bell, Douglas A.
Published 2015

Genome-Wide Analysis of Menin Binding Provides Insights into MEN1 Tumorigenesis

by Scacheri, Peter C, Davis, Sean, Odom, Duncan T, Crawford, Gregory E, Perkins, Stacie, Halawi, Mohamad J, Agarwal, Sunita K, Marx, Stephen J, Spiegel, Allen M, Meltzer, Paul S, Collins, Francis S
Published 2006

Dissecting the regulatory architecture of gene expression QTLs

by Gaffney, Daniel J, Veyrieras, Jean-Baptiste, Degner, Jacob F, Pique-Regi, Roger, Pai, Athma A, Crawford, Gregory E, Stephens, Matthew, Gilad, Yoav, Pritchard, Jonathan K
Published 2012

Gene expression during normal and FSHD myogenesis

by Tsumagari, Koji, Chang, Shao-Chi, Lacey, Michelle, Baribault, Carl, Chittur, Sridar V, Sowden, Janet, Tawil, Rabi, Crawford, Gregory E, Ehrlich, Melanie
Published 2011

Synergistic and tunable human gene activation by combinations of synthetic transcription factors

by Perez-Pinera, Pablo, Ousterout, David G., Brunger, Jonathan M., Farin, Alicia M., Glass, Katherine A., Guilak, Farshid, Crawford, Gregory E., Hartemink, Alexander J., Gersbach, Charles A.
Published 2013

Deletion of a Conserved cis-Element in the Ifng Locus Highlights the Role of Acute Histone Acetylation in Modulating Inducible Gene Transcription

by Balasubramani, Anand, Winstead, Colleen J., Turner, Henrietta, Janowski, Karen M., Harbour, Stacey N., Shibata, Yoichiro, Crawford, Gregory E., Hatton, Robin D., Weaver, Casey T.
Published 2014

DNA methylation and differentiation: HOX genes in muscle cells

by Tsumagari, Koji, Baribault, Carl, Terragni, Jolyon, Chandra, Sruti, Renshaw, Chloe, Sun, Zhiyi, Song, Lingyun, Crawford, Gregory E, Pradhan, Sriharsa, Lacey, Michelle, Ehrlich, Melanie
Published 2013

Regulation of chromatin accessibility and Zic binding at enhancers in the developing cerebellum

by Frank, Christopher L., Liu, Fang, Wijayatunge, Ranjula, Song, Lingyun, Biegler, Matthew T., Yang, Marty G., Vockley, Christopher M., Safi, Alexias, Gersbach, Charles A., Crawford, Gregory E., West, Anne E.
Published 2015

Stringent comparative sequence analysis reveals SOX10 as a putative inhibitor of glial cell differentiation

by Gopinath, Chetna, Law, William D., Rodríguez-Molina, José F., Prasad, Arjun B., Song, Lingyun, Crawford, Gregory E., Mullikin, James C., Svaren, John, Antonellis, Anthony
Published 2016

Differential contribution of cis-regulatory elements to higher order chromatin structure and expression of the CFTR locus

by Yang, Rui, Kerschner, Jenny L., Gosalia, Nehal, Neems, Daniel, Gorsic, Lidija K., Safi, Alexias, Crawford, Gregory E., Kosak, Steven T., Leir, Shih-Hsing, Harris, Ann
Published 2016

Highly Specific Epigenome Editing by CRISPR/Cas9 Repressors for Silencing of Distal Regulatory Elements

by Thakore, Pratiksha I., D’Ippolito, Anthony M, Song, Lingyun, Safi, Alexias, Shivakumar, Nishkala K., Kabadi, Ami M., Reddy, Timothy E., Crawford, Gregory E., Gersbach, Charles A.
Published 2015

Epigenome editing by a CRISPR/Cas9-based acetyltransferase activates genes from promoters and enhancers

by Hilton, Isaac B., D’Ippolito, Anthony M., Vockley, Christopher M., Thakore, Pratiksha I., Crawford, Gregory E., Reddy, Timothy E., Gersbach, Charles A.
Published 2015

Chromatin Accessibility Mapping Identifies Mediators of Basal Transcription and Retinoid-Induced Repression of OTX2 in Medulloblastoma

by Wortham, Matthew, Guo, Changcun, Zhang, Monica, Song, Lingyun, Lee, Bum-Kyu, Iyer, Vishwanath R., Furey, Terrence S., Crawford, Gregory E., Yan, Hai, He, Yiping
Published 2014

Identification and Characterization of Cell Type–Specific and Ubiquitous Chromatin Regulatory Structures in the Human Genome

by Xi, Hualin, Shulha, Hennady P, Lin, Jane M, Vales, Teresa R, Fu, Yutao, Bodine, David M, McKay, Ronald D. G, Chenoweth, Josh G, Tesar, Paul J, Furey, Terrence S, Ren, Bing, Weng, Zhiping, Crawford, Gregory E
Published 2007