Large-scale profiling of microRNAs for The Cancer Genome Atlas

by Chu, Andy, Robertson, Gordon, Brooks, Denise, Mungall, Andrew J., Birol, Inanc, Coope, Robin, Ma, Yussanne, Jones, Steven, Marra, Marco A.
Published 2016

The evolution of imprinting: chromosomal mapping of orthologues of mammalian imprinted domains in monotreme and marsupial mammals

by Edwards, Carol A, Rens, Willem, Clarke, Oliver, Mungall, Andrew J, Hore, Timothy, Graves, Jennifer A Marshall, Dunham, Ian, Ferguson-Smith, Anne C, Ferguson-Smith, Malcolm A
Published 2007

The human homologue of unc-93 maps to chromosome 6q27 – characterisation and analysis in sporadic epithelial ovarian cancer

by Liu, Ying, Dodds, Phillippa, Emilion, Gracy, Mungall, Andrew J, Dunham, Ian, Beck, Stephan, Wells, R Spencer, Charnock, F Mark L, Ganesan, Trivadi S
Published 2002

Putative BRAF activating fusion in a medullary thyroid cancer

by Kasaian, Katayoon, Wiseman, Sam M., Walker, Blair A., Schein, Jacqueline E., Hirst, Martin, Moore, Richard A., Mungall, Andrew J., Marra, Marco A., Jones, Steven J.M.
Published 2016

The genomic and transcriptomic landscape of anaplastic thyroid cancer: implications for therapy

by Kasaian, Katayoon, Wiseman, Sam M., Walker, Blair A., Schein, Jacqueline E., Zhao, Yongjun, Hirst, Martin, Moore, Richard A., Mungall, Andrew J., Marra, Marco A., Jones, Steven JM
Published 2015

Recurrent targets of aberrant somatic hypermutation in lymphoma

by Khodabakhshi, Alireza Hadj, Morin, Ryan D., Fejes, Anthony P., Mungall, Andrew J., Mungall, Karen L., Bolger-Munro, Madison, Johnson, Nathalie A., Connors, Joseph M., Gascoyne, Randy D., Marra, Marco A., Birol, Inanc, Jones, Steven J. M.
Published 2012

Assembling the 20 Gb white spruce (Picea glauca) genome from whole-genome shotgun sequencing data

by Birol, Inanc, Raymond, Anthony, Jackman, Shaun D., Pleasance, Stephen, Coope, Robin, Taylor, Greg A., Yuen, Macaire Man Saint, Keeling, Christopher I., Brand, Dana, Vandervalk, Benjamin P., Kirk, Heather, Pandoh, Pawan, Moore, Richard A., Zhao, Yongjun, Mungall, Andrew J., Jaquish, Barry, Yanchuk, Alvin, Ritland, Carol, Boyle, Brian, Bousquet, Jean, Ritland, Kermit, MacKay, John, Bohlmann, Jörg, Jones, Steven J.M.
Published 2013

Barnacle: detecting and characterizing tandem duplications and fusions in transcriptome assemblies

by Swanson, Lucas, Robertson, Gordon, Mungall, Karen L, Butterfield, Yaron S, Chiu, Readman, Corbett, Richard D, Docking, T Roderick, Hogge, Donna, Jackman, Shaun D, Moore, Richard A, Mungall, Andrew J, Nip, Ka Ming, Parker, Jeremy DK, Qian, Jenny Qing, Raymond, Anthony, Sung, Sandy, Tam, Angela, Thiessen, Nina, Varhol, Richard, Wang, Sherry, Yorukoglu, Deniz, Zhao, YongJun, Hoodless, Pamela A, Sahinalp, S Cenk, Karsan, Aly, Birol, Inanc
Published 2013

MLLT1 YEATS domain mutations in clinically distinctive Favourable Histology Wilms tumours

by Perlman, Elizabeth J., Gadd, Samantha, Arold, Stefan T., Radhakrishnan, Anand, Gerhard, Daniela S., Jennings, Lawrence, Huff, Vicki, Guidry Auvil, Jaime M., Davidsen, Tanja M., Dome, Jeffrey S., Meerzaman, Daoud, Hsu, Chih Hao, Nguyen, Cu, Anderson, James, Ma, Yussanne, Mungall, Andrew J., Moore, Richard A., Marra, Marco A., Mullighan, Charles G., Ma, Jing, Wheeler, David A., Hampton, Oliver A., Gastier-Foster, Julie M., Ross, Nicole, Smith, Malcolm A.
Published 2015

Immunogenicity of recurrent mutations in MYD88 and EZH2 in non-Hodgkin lymphomas

by Nielsen, Julie S, Chang, Andrew R, Wick, Darin A, Sedgwick, Colin G, Zong, Zusheng, Mungall, Andrew J, Baraki, Bemuluyigza, Kinloch, Natalie, Brumme, Zabrina L, Treon, Steven P, Connors, Joseph M, Gascoyne, Randy D, Webb, John R, Berry, Brian R, Morin, Ryan D, Macpherson, Nicol, Nelson, Brad H
Published 2015

Comprehensive miRNA sequence analysis reveals survival differences in diffuse large B-cell lymphoma patients

by Lim, Emilia L, Trinh, Diane L, Scott, David W, Chu, Andy, Krzywinski, Martin, Zhao, Yongjun, Robertson, A Gordon, Mungall, Andrew J, Schein, Jacqueline, Boyle, Merrill, Mottok, Anja, Ennishi, Daisuke, Johnson, Nathalie A, Steidl, Christian, Connors, Joseph M, Morin, Ryan D, Gascoyne, Randy D, Marra, Marco A
Published 2015

A somatic reference standard for cancer genome sequencing

by Craig, David W., Nasser, Sara, Corbett, Richard, Chan, Simon K., Murray, Lisa, Legendre, Christophe, Tembe, Waibhav, Adkins, Jonathan, Kim, Nancy, Wong, Shukmei, Baker, Angela, Enriquez, Daniel, Pond, Stephanie, Pleasance, Erin, Mungall, Andrew J., Moore, Richard A., McDaniel, Timothy, Ma, Yussanne, Jones, Steven J. M., Marra, Marco A., Carpten, John D., Liang, Winnie S.
Published 2016

DNA hypomethylation within specific transposable element families associates with tissue-specific enhancer landscape

by Xie, Mingchao, Hong, Chibo, Zhang, Bo, Lowdon, Rebecca, Xing, Xiaoyun, Li, Daofeng, Zhou, Xin, Lee, Hyung Joo, Maire, Cecile L., Ligon, Keith L., Gascard, Philippe, Sigaroudinia, Mahvash, Tlsty, Thea D., Kadlecek, Theresa, Weiss, Arthur, O’Geen, Henriette, Farnham, Peggy J., Madden, Pamela A.F., Mungall, Andrew J., Tam, Angela, Kamoh, Baljit, Cho, Stephanie, Moore, Richard, Hirst, Martin, Marra, Marco A., Costello, Joseph F., Wang, Ting
Published 2013

miR-509-3p is clinically significant and strongly attenuates cellular migration and multi-cellular spheroids in ovarian cancer

by Pan, Yinghong, Robertson, Gordon, Pedersen, Lykke, Lim, Emilia, Hernandez-Herrera, Anadulce, Rowat, Amy C., Patil, Sagar L., Chan, Clara K., Wen, Yunfei, Zhang, Xinna, Basu-Roy, Upal, Mansukhani, Alka, Chu, Andy, Sipahimalani, Payal, Bowlby, Reanne, Brooks, Denise, Thiessen, Nina, Coarfa, Cristian, Ma, Yussanne, Moore, Richard A., Schein, Jacquie E., Mungall, Andrew J., Liu, Jinsong, Pecot, Chad V., Sood, Anil K., Jones, Steven J.M., Marra, Marco A., Gunaratne, Preethi H.
Published 2016

Lessons learned from the application of whole-genome analysis to the treatment of patients with advanced cancers

by Laskin, Janessa, Jones, Steven, Aparicio, Samuel, Chia, Stephen, Ch'ng, Carolyn, Deyell, Rebecca, Eirew, Peter, Fok, Alexandra, Gelmon, Karen, Ho, Cheryl, Huntsman, David, Jones, Martin, Kasaian, Katayoon, Karsan, Aly, Leelakumari, Sreeja, Li, Yvonne, Lim, Howard, Ma, Yussanne, Mar, Colin, Martin, Monty, Moore, Richard, Mungall, Andrew, Mungall, Karen, Pleasance, Erin, Rassekh, S. Rod, Renouf, Daniel, Shen, Yaoqing, Schein, Jacqueline, Schrader, Kasmintan, Sun, Sophie, Tinker, Anna, Zhao, Eric, Yip, Stephen, Marra, Marco A.
Published 2015

Histological Transformation and Progression in Follicular Lymphoma: A Clonal Evolution Study

by Kridel, Robert, Chan, Fong Chun, Mottok, Anja, Boyle, Merrill, Farinha, Pedro, Tan, King, Meissner, Barbara, Bashashati, Ali, McPherson, Andrew, Roth, Andrew, Shumansky, Karey, Yap, Damian, Ben-Neriah, Susana, Rosner, Jamie, Smith, Maia A., Nielsen, Cydney, Giné, Eva, Telenius, Adele, Ennishi, Daisuke, Mungall, Andrew, Moore, Richard, Morin, Ryan D., Johnson, Nathalie A., Sehn, Laurie H., Tousseyn, Thomas, Dogan, Ahmet, Connors, Joseph M., Scott, David W., Steidl, Christian, Marra, Marco A., Gascoyne, Randy D., Shah, Sohrab P.
Published 2016

Epigenetic and transcriptional determinants of the human breast

by Gascard, Philippe, Bilenky, Misha, Sigaroudinia, Mahvash, Zhao, Jianxin, Li, Luolan, Carles, Annaick, Delaney, Allen, Tam, Angela, Kamoh, Baljit, Cho, Stephanie, Griffith, Malachi, Chu, Andy, Robertson, Gordon, Cheung, Dorothy, Li, Irene, Heravi-Moussavi, Alireza, Moksa, Michelle, Mingay, Matthew, Hussainkhel, Angela, Davis, Brad, Nagarajan, Raman P., Hong, Chibo, Echipare, Lorigail, O’Geen, Henriette, Hangauer, Matthew J., Cheng, Jeffrey B., Neel, Dana, Hu, Donglei, McManus, Michael T., Moore, Richard, Mungall, Andrew, Ma, Yussanne, Plettner, Patrick, Ziv, Elad, Wang, Ting, Farnham, Peggy J., Jones, Steven J.M., Marra, Marco A., Tlsty, Thea D., Costello, Joseph F., Hirst, Martin
Published 2015

Frequent mutation of histone modifying genes in non-Hodgkin lymphoma

by Morin, Ryan D., Mendez-Lago, Maria, Mungall, Andrew J., Goya, Rodrigo, Mungall, Karen L., Corbett, Richard, Johnson, Nathalie A., Severson, Tesa M., Chiu, Readman, Field, Matthew, Jackman, Shaun, Krzywinski, Martin, Scott, David W., Trinh, Diane L., Tamura-Wells, Jessica, Li, Sa, Firme, Marlo, Rogic, Sanja, Griffith, Malachi, Chan, Susanna, Yakovenko, Oleksandr, Meyer, Irmtraud M., Zhao, Eric Y., Smailus, Duane, Moksa, Michelle, Chittaranjan, Suganthi, Rimsza, Lisa, Brooks-Wilson, Angela, Spinelli, John J., Ben-Neriah, Susana, Meissner, Barbara, Woolcock, Bruce, Boyle, Merrill, McDonald, Helen, Tam, Angela, Zhao, Yongjun, Delaney, Allen, Zeng, Thomas, Tse, Kane, Butterfield, Yaron, Birol, Inanc, Holt, Rob, Schein, Jacqueline, Horsman, Douglas E., Moore, Richard, Jones, Steven J.M., Connors, Joseph M., Hirst, Martin, Gascoyne, Randy D., Marra, Marco A.
Published 2011

Genomic analyses identify recurrent MEF2D fusions in acute lymphoblastic leukaemia

by Gu, Zhaohui, Churchman, Michelle, Roberts, Kathryn, Li, Yongjin, Liu, Yu, Harvey, Richard C., McCastlain, Kelly, Reshmi, Shalini C., Payne-Turner, Debbie, Iacobucci, Ilaria, Shao, Ying, Chen, I-Ming, Valentine, Marcus, Pei, Deqing, Mungall, Karen L., Mungall, Andrew J., Ma, Yussanne, Moore, Richard, Marra, Marco, Stonerock, Eileen, Gastier-Foster, Julie M., Devidas, Meenakshi, Dai, Yunfeng, Wood, Brent, Borowitz, Michael, Larsen, Eric E., Maloney, Kelly, Mattano Jr, Leonard A., Angiolillo, Anne, Salzer, Wanda L., Burke, Michael J., Gianni, Francesca, Spinelli, Orietta, Radich, Jerald P., Minden, Mark D., Moorman, Anthony V., Patel, Bella, Fielding, Adele K., Rowe, Jacob M., Luger, Selina M., Bhatia, Ravi, Aldoss, Ibrahim, Forman, Stephen J., Kohlschmidt, Jessica, Mrózek, Krzysztof, Marcucci, Guido, Bloomfield, Clara D., Stock, Wendy, Kornblau, Steven, Kantarjian, Hagop M., Konopleva, Marina, Paietta, Elisabeth, Willman, Cheryl L., L. Loh, Mignon, P. Hunger, Stephen, Mullighan, Charles G.
Published 2016

Integrative analysis of 111 reference human epigenomes

by Kundaje, Anshul, Meuleman, Wouter, Ernst, Jason, Bilenky, Misha, Yen, Angela, Kheradpour, Pouya, Zhang, Zhizhuo, Heravi-Moussavi, Alireza, Liu, Yaping, Amin, Viren, Ziller, Michael J, Whitaker, John W, Schultz, Matthew D, Sandstrom, Richard S, Eaton, Matthew L, Wu, Yi-Chieh, Wang, Jianrong, Ward, Lucas D, Sarkar, Abhishek, Quon, Gerald, Pfenning, Andreas, Wang, Xinchen, Claussnitzer, Melina, Coarfa, Cristian, Harris, R Alan, Shoresh, Noam, Epstein, Charles B, Gjoneska, Elizabeta, Leung, Danny, Xie, Wei, Hawkins, R David, Lister, Ryan, Hong, Chibo, Gascard, Philippe, Mungall, Andrew J, Moore, Richard, Chuah, Eric, Tam, Angela, Canfield, Theresa K, Hansen, R Scott, Kaul, Rajinder, Sabo, Peter J, Bansal, Mukul S, Carles, Annaick, Dixon, Jesse R, Farh, Kai-How, Feizi, Soheil, Karlic, Rosa, Kim, Ah-Ram, Kulkarni, Ashwinikumar, Li, Daofeng, Lowdon, Rebecca, Mercer, Tim R, Neph, Shane J, Onuchic, Vitor, Polak, Paz, Rajagopal, Nisha, Ray, Pradipta, Sallari, Richard C, Siebenthall, Kyle T, Sinnott-Armstrong, Nicholas, Stevens, Michael, Thurman, Robert E, Wu, Jie, Zhang, Bo, Zhou, Xin, Beaudet, Arthur E, Boyer, Laurie A, De Jager, Philip, Farnham, Peggy J, Fisher, Susan J, Haussler, David, Jones, Steven, Li, Wei, Marra, Marco, McManus, Michael T, Sunyaev, Shamil, Thomson, James A, Tlsty, Thea D, Tsai, Li-Huei, Wang, Wei, Waterland, Robert A, Zhang, Michael, Chadwick, Lisa H, Bernstein, Bradley E, Costello, Joseph F, Ecker, Joseph R, Hirst, Martin, Meissner, Alexander, Milosavljevic, Aleksandar, Ren, Bing, Stamatoyannopoulos, John A, Wang, Ting, Kellis, Manolis
Published 2015