Detection of allele-specific methylation through a generalized heterogeneous epigenome model

by Peng, Qian, Ecker, Joseph R.
Published 2012

Arabidopsis ETO1 specifically interacts with and negatively regulates type 2 1-aminocyclopropane-1-carboxylate synthases

by Yoshida, Hitoshi, Nagata, Masayasu, Saito, Koji, Wang, Kevin LC, Ecker, Joseph R
Published 2005

Unexpected Diversity of Chloroplast Noncoding RNAs as Revealed by Deep Sequencing of the Arabidopsis Transcriptome

by Hotto, Amber M., Schmitz, Robert J., Fei, Zhangjun, Ecker, Joseph R., Stern, David B.
Published 2011

The phosphatase laforin crosses evolutionary boundaries and links carbohydrate metabolism to neuronal disease

by Gentry, Matthew S., Dowen, Robert H., Worby, Carolyn A., Mattoo, Seema, Ecker, Joseph R., Dixon, Jack E.
Published 2007

Release Factor One Is Nonessential in Escherichia coli

by Johnson, David B. F., Wang, Chong, Xu, Jianfeng, Schultz, Matthew D., Schmitz, Robert J., Ecker, Joseph R., Wang, Lei
Published 2012

Response to Perspective : “Separation anxiety: An analysis of ethylene-induced cleavage of EIN2”

by Qiao, Hong, Shen, Zhouxin, Huang, Shao-shan Carol, Schmitz, Robert J., Urich, Mark A., Briggs, Steven P., Ecker, Joseph R.
Published 2013

Stress induced gene expression drives transient DNA methylation changes at adjacent repetitive elements

by Secco, David, Wang, Chuang, Shou, Huixia, Schultz, Matthew D, Chiarenza, Serge, Nussaume, Laurent, Ecker, Joseph R, Whelan, James, Lister, Ryan
Published 2015

EIN2-dependent regulation of acetylation of histone H3K14 and non-canonical histone H3K23 in ethylene signalling

by Zhang, Fan, Qi, Bin, Wang, Likai, Zhao, Bo, Rode, Siddharth, Riggan, Nathaniel D., Ecker, Joseph R., Qiao, Hong
Published 2016

methylPipe and compEpiTools: a suite of R packages for the integrative analysis of epigenomics data

by Kishore, Kamal, de Pretis, Stefano, Lister, Ryan, Morelli, Marco J., Bianchi, Valerio, Amati, Bruno, Ecker, Joseph R., Pelizzola, Mattia
Published 2015

Surveillance of 3′ Noncoding Transcripts Requires FIERY1 and XRN3 in Arabidopsis

by Kurihara, Yukio, Schmitz, Robert J., Nery, Joseph R., Schultz, Matthew D., Okubo-Kurihara, Emiko, Morosawa, Taeko, Tanaka, Maho, Toyoda, Tetsuro, Seki, Motoaki, Ecker, Joseph R.
Published 2012

RF1 Knockout Allows Ribosomal Incorporation of Unnatural Amino Acids at Multiple Sites

by Johnson, David B.F., Xu, Jianfeng, Shen, Zhouxin, Takimoto, Jeffrey K., Schultz, Matthew D., Schmitz, Robert J., Ecker, Joseph R., Briggs, Steven P., Wang, Lei
Published 2011

Retroviral DNA Integration: ASLV, HIV, and MLV Show Distinct Target Site Preferences

by Mitchell, Rick S, Beitzel, Brett F, Schroder, Astrid R. W, Shinn, Paul, Chen, Huaming, Berry, Charles C, Ecker, Joseph R, Bushman, Frederic D
Published 2004

Unique cell-type specific patterns of DNA methylation in the root meristem

by Kawakatsu, Taiji, Stuart, Tim, Valdes, Manuel, Breakfield, Natalie, Schmitz, Robert J., Nery, Joseph R., Urich, Mark A., Han, Xinwei, Lister, Ryan, Benfey, Philip N., Ecker, Joseph R.
Published 2016

The Arabidopsis Auxin Receptor F-Box Proteins AFB4 and AFB5 Are Required for Response to the Synthetic Auxin Picloram

by Prigge, Michael J., Greenham, Kathleen, Zhang, Yi, Santner, Aaron, Castillejo, Cristina, Mutka, Andrew M., O’Malley, Ronan C., Ecker, Joseph R., Kunkel, Barbara N., Estelle, Mark
Published 2016

An ABA-increased interaction of the PYL6 ABA receptor with MYC2 Transcription Factor: A putative link of ABA and JA signaling

by Aleman, Fernando, Yazaki, Junshi, Lee, Melissa, Takahashi, Yohei, Kim, Alice Y., Li, Zixing, Kinoshita, Toshinori, Ecker, Joseph R., Schroeder, Julian I.
Published 2016

Retroviral DNA Integration: Viral and Cellular Determinants of Target-Site Selection

by Lewinski, Mary K, Yamashita, Masahiro, Emerman, Michael, Ciuffi, Angela, Marshall, Heather, Crawford, Gregory, Collins, Francis, Shinn, Paul, Leipzig, Jeremy, Hannenhalli, Sridhar, Berry, Charles C, Ecker, Joseph R, Bushman, Frederic D
Published 2006

CDPKs CPK6 and CPK3 Function in ABA Regulation of Guard Cell S-Type Anion- and Ca2+- Permeable Channels and Stomatal Closure

by Mori, Izumi C, Murata, Yoshiyuki, Yang, Yingzhen, Munemasa, Shintaro, Wang, Yong-Fei, Andreoli, Shannon, Tiriac, Hervé, Alonso, Jose M, Harper, Jeffery F, Ecker, Joseph R, Kwak, June M, Schroeder, Julian I
Published 2006

Patterns of Population Epigenomic Diversity

by Schmitz, Robert J., Schultz, Matthew D., Urich, Mark A., Nery, Joseph R., Pelizzola, Mattia, Libiger, Ondrej, Alix, Andrew, McCosh, Richard B., Chen, Huaming, Schork, Nicholas J., Ecker, Joseph R.
Published 2013

Correction: DNA Topoisomerase 1α Promotes Transcriptional Silencing of Transposable Elements through DNA Methylation and Histone Lysine 9 Dimethylation in Arabidopsis

by Dinh, Thanh Theresa, Gao, Lei, Liu, Xigang, Li, Dongming, Li, Shengben, Zhao, Yuanyuan, O'Leary, Michael, Le, Brandon, Schmitz, Robert J., Manavella, Pablo A., Li, Shaofang, Weigel, Detlef, Pontes, Olga, Ecker, Joseph R., Chen, Xuemei
Published 2015

Epigenomic landscapes of retinal rods and cones

by Mo, Alisa, Luo, Chongyuan, Davis, Fred P, Mukamel, Eran A, Henry, Gilbert L, Nery, Joseph R, Urich, Mark A, Picard, Serge, Lister, Ryan, Eddy, Sean R, Beer, Michael A, Ecker, Joseph R, Nathans, Jeremy
Published 2016