Sequencing Strategies to Guide Decision Making in Cancer Treatment

by Topham, James T., Marra, Marco A.
Published 2016

MEF2 transcription factors: developmental regulators and emerging cancer genes

by Pon, Julia R., Marra, Marco A.
Published 2015

Next-Generation Sequencing Approaches in Cancer: Where Have They Brought Us and Where Will They Take Us?

by LeBlanc, Veronique G., Marra, Marco A.
Published 2015

High-throughput sequencing: a failure mode analysis

by Yang, George S, Stott, Jeffery M, Smailus, Duane, Barber, Sarah A, Balasundaram, Miruna, Marra, Marco A, Holt, Robert A
Published 2005

Sequence biases in large scale gene expression profiling data

by Siddiqui, Asim S., Delaney, Allen D., Schnerch, Angelique, Griffith, Obi L., Jones, Steven J. M., Marra, Marco A.
Published 2006

Genomic testing to determine drug response: measuring preferences of the public and patients using Discrete Choice Experiment (DCE)

by Najafzadeh, Mehdi, Johnston, Karissa M, Peacock, Stuart J, Connors, Joseph M, Marra, Marco A, Lynd, Larry D, Marra, Carlo A
Published 2013

Cross-cancer profiling of molecular alterations within the human autophagy interaction network

by Lebovitz, Chandra B, Robertson, A Gordon, Goya, Rodrigo, Jones, Steven J, Morin, Ryan D, Marra, Marco A, Gorski, Sharon M
Published 2015

Large-scale profiling of microRNAs for The Cancer Genome Atlas

by Chu, Andy, Robertson, Gordon, Brooks, Denise, Mungall, Andrew J., Birol, Inanc, Coope, Robin, Ma, Yussanne, Jones, Steven, Marra, Marco A.
Published 2016

Feature-based classifiers for somatic mutation detection in tumour–normal paired sequencing data

by Ding, Jiarui, Bashashati, Ali, Roth, Andrew, Oloumi, Arusha, Tse, Kane, Zeng, Thomas, Haffari, Gholamreza, Hirst, Martin, Marra, Marco A., Condon, Anne, Aparicio, Samuel, Shah, Sohrab P.
Published 2012

Novel expressed sequences identified in a model of androgen independent prostate cancer

by Quayle, Steven N, Hare, Heidi, Delaney, Allen D, Hirst, Martin, Hwang, Dorothy, Schein, Jacqueline E, Jones, Steven JM, Marra, Marco A, Sadar, Marianne D
Published 2007

A systematic screen for genes expressed in definitive endoderm by Serial Analysis of Gene Expression (SAGE)

by Hou, Juan, Charters, Anita M, Lee, Sam C, Zhao, Yongjun, Wu, Mona K, Jones, Steven JM, Marra, Marco A, Hoodless, Pamela A
Published 2007

JointSNVMix: a probabilistic model for accurate detection of somatic mutations in normal/tumour paired next-generation sequencing data

by Roth, Andrew, Ding, Jiarui, Morin, Ryan, Crisan, Anamaria, Ha, Gavin, Giuliany, Ryan, Bashashati, Ali, Hirst, Martin, Turashvili, Gulisa, Oloumi, Arusha, Marra, Marco A., Aparicio, Samuel, Shah, Sohrab P.
Published 2012

Twist1 Transcriptional Targets in the Developing Atrio-Ventricular Canal of the Mouse

by Vrljicak, Pavle, Cullum, Rebecca, Xu, Eric, Chang, Alex C. Y., Wederell, Elizabeth D., Bilenky, Mikhail, Jones, Steven J. M., Marra, Marco A., Karsan, Aly, Hoodless, Pamela A.
Published 2012

Putative BRAF activating fusion in a medullary thyroid cancer

by Kasaian, Katayoon, Wiseman, Sam M., Walker, Blair A., Schein, Jacqueline E., Hirst, Martin, Moore, Richard A., Mungall, Andrew J., Marra, Marco A., Jones, Steven J.M.
Published 2016

The genomic and transcriptomic landscape of anaplastic thyroid cancer: implications for therapy

by Kasaian, Katayoon, Wiseman, Sam M., Walker, Blair A., Schein, Jacqueline E., Zhao, Yongjun, Hirst, Martin, Moore, Richard A., Mungall, Andrew J., Marra, Marco A., Jones, Steven JM
Published 2015

Precursor States of Brain Tumor Initiating Cell Lines Are Predictive of Survival in Xenografts and Associated with Glioblastoma Subtypes

by Cusulin, Carlo, Chesnelong, Charles, Bose, Pinaki, Bilenky, Misha, Kopciuk, Karen, Chan, Jennifer A., Cairncross, J. Gregory, Jones, Steven J., Marra, Marco A., Luchman, H. Artee, Weiss, Samuel
Published 2015

The Drosophila TIPE family member Sigmar interacts with the Ste20-like kinase Misshapen and modulates JNK signaling, cytoskeletal remodeling and autophagy

by Chittaranjan, Suganthi, Xu, Jing, Kuzyk, Michael, Dullat, Harpreet K., Wilton, James, DeVorkin, Lindsay, Lebovitz, Chandra, Morin, Gregg B., Marra, Marco A., Gorski, Sharon M.
Published 2015

MEF2B mutations in non-Hodgkin lymphoma dysregulate cell migration by decreasing MEF2B target gene activation

by Pon, Julia R., Wong, Jackson, Saberi, Saeed, Alder, Olivia, Moksa, Michelle, Grace Cheng, S. -W., Morin, Gregg B., Hoodless, Pamela A., Hirst, Martin, Marra, Marco A.
Published 2015

Correlations of EGFR mutations and increases in EGFR and HER2 copy number to gefitinib response in a retrospective analysis of lung cancer patients

by Pugh, Trevor J, Bebb, Gwyn, Barclay, Lorena, Sutcliffe, Margaret, Fee, John, Salski, Chris, O'Connor, Robert, Ho, Cheryl, Murray, Nevin, Melosky, Barbara, English, John, Vielkind, Jeurgen, Horsman, Doug, Laskin, Janessa J, Marra, Marco A
Published 2007

Analysis of the prostate cancer cell line LNCaP transcriptome using a sequencing-by-synthesis approach

by Bainbridge, Matthew N, Warren, René L, Hirst, Martin, Romanuik, Tammy, Zeng, Thomas, Go, Anne, Delaney, Allen, Griffith, Malachi, Hickenbotham, Matthew, Magrini, Vincent, Mardis, Elaine R, Sadar, Marianne D, Siddiqui, Asim S, Marra, Marco A, Jones, Steven JM
Published 2006