Comparison of Analysis Tools for miRNA High Throughput Sequencing Using Nerve Crush as a Model

by Metpally, Raghu Prasad Rao, Nasser, Sara, Malenica, Ivana, Courtright, Amanda, Carlson, Elizabeth, Ghaffari, Layla, Villa, Stephen, Tembe, Waibhav, Van Keuren-Jensen, Kendall
Published 2013

The Marker State Space (MSS) Method for Classifying Clinical Samples

by Fallon, Brian P., Curnutte, Bryan, Maupin, Kevin A., Partyka, Katie, Choi, Sunguk, Brand, Randall E., Langmead, Christopher J., Tembe, Waibhav, Haab, Brian B.
Published 2013

Profiles of Extracellular miRNA in Cerebrospinal Fluid and Serum from Patients with Alzheimer's and Parkinson's Diseases Correlate with Disease Status and Features of Pathology

by Burgos, Kasandra, Malenica, Ivana, Metpally, Raghu, Courtright, Amanda, Rakela, Benjamin, Beach, Thomas, Shill, Holly, Adler, Charles, Sabbagh, Marwan, Villa, Stephen, Tembe, Waibhav, Craig, David, Van Keuren-Jensen, Kendall
Published 2014

Long insert whole genome sequencing for copy number variant and translocation detection

by Liang, Winnie S., Aldrich, Jessica, Tembe, Waibhav, Kurdoglu, Ahmet, Cherni, Irene, Phillips, Lori, Reiman, Rebecca, Baker, Angela, Weiss, Glen J., Carpten, John D., Craig, David W.
Published 2014

Comparative RNA-Seq and Microarray Analysis of Gene Expression Changes in B-Cell Lymphomas of Canis familiaris

by Mooney, Marie, Bond, Jeffrey, Monks, Noel, Eugster, Emily, Cherba, David, Berlinski, Pamela, Kamerling, Steve, Marotti, Keith, Simpson, Heather, Rusk, Tony, Tembe, Waibhav, Legendre, Christophe, Benson, Hollie, Liang, Winnie, Webb, Craig Paul
Published 2013

Open-access synthetic spike-in mRNA-seq data for cancer gene fusions

by Tembe, Waibhav D, Pond, Stephanie JK, Legendre, Christophe, Chuang, Han-Yu, Liang, Winnie S, Kim, Nancy E, Montel, Valerie, Wong, Shukmei, McDaniel, Timothy K, Craig, David W, Carpten, John D
Published 2014

Personalized treatment of Sézary syndrome by targeting a novel CTLA4:CD28 fusion

by Sekulic, Aleksandar, Liang, Winnie S, Tembe, Waibhav, Izatt, Tyler, Kruglyak, Semyon, Kiefer, Jeffrey A, Cuyugan, Lori, Zismann, Victoria, Legendre, Christophe, Pittelkow, Mark R, Gohmann, John J, De Castro, Fernando R, Trent, Jeffrey, Carpten, John, Craig, David W, McDaniel, Timothy K
Published 2015

Paired Tumor and Normal Whole Genome Sequencing of Metastatic Olfactory Neuroblastoma

by Weiss, Glen J., Liang, Winnie S., Izatt, Tyler, Arora, Shilpi, Cherni, Irene, Raju, Robert N., Hostetter, Galen, Kurdoglu, Ahmet, Christoforides, Alexis, Sinari, Shripad, Baker, Angela S., Metpally, Raghu, Tembe, Waibhav D., Phillips, Lori, Von Hoff, Daniel D., Craig, David W., Carpten, John D.
Published 2012

Next-Generation Sequencing of Coccidioides immitis Isolated during Cluster Investigation

by Engelthaler, David M., Chiller, Tom, Schupp, James A., Colvin, Joshua, Beckstrom-Sternberg, Stephen M., Driebe, Elizabeth M., Moses, Tracy, Tembe, Waibhav, Sinari, Shripad, Beckstrom-Sternberg, James S., Christoforides, Alexis, Pearson, John V., Carpten, John, Keim, Paul, Peterson, Ashley, Terashita, Dawn, Balajee, S. Arunmozhi
Published 2011

Deep Clonal Profiling of Formalin Fixed Paraffin Embedded Clinical Samples

by Holley, Tara, Lenkiewicz, Elizabeth, Evers, Lisa, Tembe, Waibhav, Ruiz, Christian, Gsponer, Joel R., Rentsch, Cyrill A., Bubendorf, Lukas, Stapleton, Mark, Amorese, Doug, Legendre, Christophe, Cunliffe, Heather E., McCullough, Ann E., Pockaj, Barbara, Craig, David, Carpten, John, Von Hoff, Daniel, Iacobuzio-Donahue, Christine, Barrett, Michael T.
Published 2012

Integrated Genomic and Epigenomic Analysis of Breast Cancer Brain Metastasis

by Salhia, Bodour, Kiefer, Jeff, Ross, Julianna T. D., Metapally, Raghu, Martinez, Rae Anne, Johnson, Kyle N., DiPerna, Danielle M., Paquette, Kimberly M., Jung, Sungwon, Nasser, Sara, Wallstrom, Garrick, Tembe, Waibhav, Baker, Angela, Carpten, John, Resau, Jim, Ryken, Timothy, Sibenaller, Zita, Petricoin, Emanuel F., Liotta, Lance A., Ramanathan, Ramesh K., Berens, Michael E., Tran, Nhan L.
Published 2014

Loss of the tumor suppressor SMARCA4 in small cell carcinoma of the ovary, hypercalcemic type (SCCOHT)

by Ramos, Pilar, Karnezis, Anthony N, Hendricks, William P D, Wang, Yemin, Tembe, Waibhav, Zismann, Victoria L, Legendre, Christophe, Liang, Winnie S, Russell, Megan L, Craig, David W, Farley, John H, Monk, Bradley J, Anthony, Stephen P, Sekulic, Aleksandar, Cunliffe, Heather E, Huntsman, David G, Trent, Jeffrey M
Published 2014

A somatic reference standard for cancer genome sequencing

by Craig, David W., Nasser, Sara, Corbett, Richard, Chan, Simon K., Murray, Lisa, Legendre, Christophe, Tembe, Waibhav, Adkins, Jonathan, Kim, Nancy, Wong, Shukmei, Baker, Angela, Enriquez, Daniel, Pond, Stephanie, Pleasance, Erin, Mungall, Andrew J., Moore, Richard A., McDaniel, Timothy, Ma, Yussanne, Jones, Steven J. M., Marra, Marco A., Carpten, John D., Liang, Winnie S.
Published 2016

Genome-Wide Characterization of Pancreatic Adenocarcinoma Patients Using Next Generation Sequencing

by Liang, Winnie S., Craig, David W., Carpten, John, Borad, Mitesh J., Demeure, Michael J., Weiss, Glen J., Izatt, Tyler, Sinari, Shripad, Christoforides, Alexis, Aldrich, Jessica, Kurdoglu, Ahmet, Barrett, Michael, Phillips, Lori, Benson, Hollie, Tembe, Waibhav, Braggio, Esteban, Kiefer, Jeffrey A., Legendre, Christophe, Posner, Richard, Hostetter, Galen H., Baker, Angela, Egan, Jan B., Han, Haiyong, Lake, Douglas, Stites, Edward C., Ramanathan, Ramesh K., Fonseca, Rafael, Stewart, A. Keith, Von Hoff, Daniel
Published 2012