Profile conditional random fields for modeling protein families with structural information

by Kinjo, Akira R.
Published 2009

A unified statistical model of protein multiple sequence alignment integrating direct coupling and insertions

by Kinjo, Akira R.
Published 2016

Liquid-theory analogy of direct-coupling analysis of multiple-sequence alignment and its implications for protein structure prediction

by Kinjo, Akira R.
Published 2015

CRNPRED: highly accurate prediction of one-dimensional protein structures by large-scale critical random networks

by Kinjo, Akira R, Nishikawa, Ken
Published 2006

Composite Structural Motifs of Binding Sites for Delineating Biological Functions of Proteins

by Kinjo, Akira R., Nakamura, Haruki
Published 2012

Predicting secondary structures, contact numbers, and residue-wise contact orders of native protein structures from amino acid sequences using critical random networks

by Kinjo, Akira R., Nishikawa, Ken
Published 2005

Similarity search for local protein structures at atomic resolution by exploiting a database management system

by Kinjo, Akira R., Nakamura, Haruki
Published 2007

GIRAF: a method for fast search and flexible alignment of ligand binding interfaces in proteins at atomic resolution

by Kinjo, Akira R., Nakamura, Haruki
Published 2012

Cooperation between phenotypic plasticity and genetic mutations can account for the cumulative selection in evolution

by Nishikawa, Ken, Kinjo, Akira R.
Published 2014

Exhaustive comparison and classification of ligand-binding surfaces in proteins

by Murakami, Yoichi, Kinoshita, Kengo, Kinjo, Akira R, Nakamura, Haruki
Published 2013

Molmil: a molecular viewer for the PDB and beyond

by Bekker, Gert-Jan, Nakamura, Haruki, Kinjo, Akira R.
Published 2016

Functional characterization of protein domains common to animal viruses and mouse

by Kinjo, Akira R, Kumagai, Yutaro, Dinh, Huy, Takeuchi, Osamu, Standley, Daron M
Published 2011

Specific Non-Local Interactions Are Not Necessary for Recovering Native Protein Dynamics

by Dasgupta, Bhaskar, Kasahara, Kota, Kamiya, Narutoshi, Nakamura, Haruki, Kinjo, Akira R.
Published 2014

Protein Data Bank Japan (PDBj): maintaining a structural data archive and resource description framework format

by Kinjo, Akira R., Suzuki, Hirofumi, Yamashita, Reiko, Ikegawa, Yasuyo, Kudou, Takahiro, Igarashi, Reiko, Kengaku, Yumiko, Cho, Hasumi, Standley, Daron M., Nakagawa, Atsushi, Nakamura, Haruki
Published 2012

Publication of nuclear magnetic resonance experimental data with semantic web technology and the application thereof to biomedical research of proteins

by Yokochi, Masashi, Kobayashi, Naohiro, Ulrich, Eldon L., Kinjo, Akira R., Iwata, Takeshi, Ioannidis, Yannis E., Livny, Miron, Markley, John L., Nakamura, Haruki, Kojima, Chojiro, Fujiwara, Toshimichi
Published 2016

Implementation of linked data in the life sciences at BioHackathon 2011

by Aoki-Kinoshita, Kiyoko F, Kinjo, Akira R, Morita, Mizuki, Igarashi, Yoshinobu, Chen, Yi-an, Shigemoto, Yasumasa, Fujisawa, Takatomo, Akune, Yukie, Katoda, Takeo, Kokubu, Anna, Mori, Takaaki, Nakao, Mitsuteru, Kawashima, Shuichi, Okamoto, Shinobu, Katayama, Toshiaki, Ogishima, Soichi
Published 2015

The 2nd DBCLS BioHackathon: interoperable bioinformatics Web services for integrated applications

by Katayama, Toshiaki, Wilkinson, Mark D, Vos, Rutger, Kawashima, Takeshi, Kawashima, Shuichi, Nakao, Mitsuteru, Yamamoto, Yasunori, Chun, Hong-Woo, Yamaguchi, Atsuko, Kawano, Shin, Aerts, Jan, Aoki-Kinoshita, Kiyoko F, Arakawa, Kazuharu, Aranda, Bruno, Bonnal, Raoul JP, Fernández, José M, Fujisawa, Takatomo, Gordon, Paul MK, Goto, Naohisa, Haider, Syed, Harris, Todd, Hatakeyama, Takashi, Ho, Isaac, Itoh, Masumi, Kasprzyk, Arek, Kido, Nobuhiro, Kim, Young-Joo, Kinjo, Akira R, Konishi, Fumikazu, Kovarskaya, Yulia, von Kuster, Greg, Labarga, Alberto, Limviphuvadh, Vachiranee, McCarthy, Luke, Nakamura, Yasukazu, Nam, Yunsun, Nishida, Kozo, Nishimura, Kunihiro, Nishizawa, Tatsuya, Ogishima, Soichi, Oinn, Tom, Okamoto, Shinobu, Okuda, Shujiro, Ono, Keiichiro, Oshita, Kazuki, Park, Keun-Joon, Putnam, Nicholas, Senger, Martin, Severin, Jessica, Shigemoto, Yasumasa, Sugawara, Hideaki, Taylor, James, Trelles, Oswaldo, Yamasaki, Chisato, Yamashita, Riu, Satoh, Noriyuki, Takagi, Toshihisa
Published 2011

The 3rd DBCLS BioHackathon: improving life science data integration with Semantic Web technologies

by Katayama, Toshiaki, Wilkinson, Mark D, Micklem, Gos, Kawashima, Shuichi, Yamaguchi, Atsuko, Nakao, Mitsuteru, Yamamoto, Yasunori, Okamoto, Shinobu, Oouchida, Kenta, Chun, Hong-Woo, Aerts, Jan, Afzal, Hammad, Antezana, Erick, Arakawa, Kazuharu, Aranda, Bruno, Belleau, Francois, Bolleman, Jerven, Bonnal, Raoul JP, Chapman, Brad, Cock, Peter JA, Eriksson, Tore, Gordon, Paul MK, Goto, Naohisa, Hayashi, Kazuhiro, Horn, Heiko, Ishiwata, Ryosuke, Kaminuma, Eli, Kasprzyk, Arek, Kawaji, Hideya, Kido, Nobuhiro, Kim, Young Joo, Kinjo, Akira R, Konishi, Fumikazu, Kwon, Kyung-Hoon, Labarga, Alberto, Lamprecht, Anna-Lena, Lin, Yu, Lindenbaum, Pierre, McCarthy, Luke, Morita, Hideyuki, Murakami, Katsuhiko, Nagao, Koji, Nishida, Kozo, Nishimura, Kunihiro, Nishizawa, Tatsuya, Ogishima, Soichi, Ono, Keiichiro, Oshita, Kazuki, Park, Keun-Joon, Prins, Pjotr, Saito, Taro L, Samwald, Matthias, Satagopam, Venkata P, Shigemoto, Yasumasa, Smith, Richard, Splendiani, Andrea, Sugawara, Hideaki, Taylor, James, Vos, Rutger A, Withers, David, Yamasaki, Chisato, Zmasek, Christian M, Kawamoto, Shoko, Okubo, Kosaku, Asai, Kiyoshi, Takagi, Toshihisa
Published 2013