Similarity search for local protein structures at atomic resolution by exploiting a database management system

A method to search for local structural similarities in proteins at atomic resolution is presented. It is demonstrated that a huge amount of structural data can be handled within a reasonable CPU time by using a conventional relational database management system with appropriate indexing of geometri...

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Bibliographic Details
Main Authors: Kinjo, Akira R., Nakamura, Haruki
Format: Online
Language:English
Published: The Biophysical Society of Japan (BSJ) 2007
Online Access:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5036654/