Cytoscape tools for the web age: D3.js and Cytoscape.js exporters

by Ono, Keiichiro, Demchak, Barry, Ideker, Trey
Published 2014

CyREST: Turbocharging Cytoscape Access for External Tools via a RESTful API

by Ono, Keiichiro, Muetze, Tanja, Kolishovski, Georgi, Shannon, Paul, Demchak, Barry
Published 2015

KEGGscape: a Cytoscape app for pathway data integration

by Nishida, Kozo, Ono, Keiichiro, Kanaya, Shigehiko, Takahashi, Koichi
Published 2014

NeXO Web: the NeXO ontology database and visualization platform

by Dutkowski, Janusz, Ono, Keiichiro, Kramer, Michael, Yu, Michael, Pratt, Dexter, Demchak, Barry, Ideker, Trey
Published 2014

cyNeo4j: connecting Neo4j and Cytoscape

by Summer, Georg, Kelder, Thomas, Ono, Keiichiro, Radonjic, Marijana, Heymans, Stephane, Demchak, Barry
Published 2015

A new reference implementation of the PSICQUIC web service

by del-Toro, Noemi, Dumousseau, Marine, Orchard, Sandra, Jimenez, Rafael C., Galeota, Eugenia, Launay, Guillaume, Goll, Johannes, Breuer, Karin, Ono, Keiichiro, Salwinski, Lukasz, Hermjakob, Henning
Published 2013

The Cytoscape app article collection

by Pico, Alexander R, Bader, Gary D, Demchak, Barry, Guitart Pla, Oriol, Hull, Timothy, Longabaugh, William, Lopes, Christian, Lotia, Samad, Molenaar, Piet, Montojo, Jason, Morris, John H, Ono, Keiichiro, Schwikowski, Benno, Welker, David, Ideker, Trey
Published 2014

The 2nd DBCLS BioHackathon: interoperable bioinformatics Web services for integrated applications

by Katayama, Toshiaki, Wilkinson, Mark D, Vos, Rutger, Kawashima, Takeshi, Kawashima, Shuichi, Nakao, Mitsuteru, Yamamoto, Yasunori, Chun, Hong-Woo, Yamaguchi, Atsuko, Kawano, Shin, Aerts, Jan, Aoki-Kinoshita, Kiyoko F, Arakawa, Kazuharu, Aranda, Bruno, Bonnal, Raoul JP, Fernández, José M, Fujisawa, Takatomo, Gordon, Paul MK, Goto, Naohisa, Haider, Syed, Harris, Todd, Hatakeyama, Takashi, Ho, Isaac, Itoh, Masumi, Kasprzyk, Arek, Kido, Nobuhiro, Kim, Young-Joo, Kinjo, Akira R, Konishi, Fumikazu, Kovarskaya, Yulia, von Kuster, Greg, Labarga, Alberto, Limviphuvadh, Vachiranee, McCarthy, Luke, Nakamura, Yasukazu, Nam, Yunsun, Nishida, Kozo, Nishimura, Kunihiro, Nishizawa, Tatsuya, Ogishima, Soichi, Oinn, Tom, Okamoto, Shinobu, Okuda, Shujiro, Ono, Keiichiro, Oshita, Kazuki, Park, Keun-Joon, Putnam, Nicholas, Senger, Martin, Severin, Jessica, Shigemoto, Yasumasa, Sugawara, Hideaki, Taylor, James, Trelles, Oswaldo, Yamasaki, Chisato, Yamashita, Riu, Satoh, Noriyuki, Takagi, Toshihisa
Published 2011

The 3rd DBCLS BioHackathon: improving life science data integration with Semantic Web technologies

by Katayama, Toshiaki, Wilkinson, Mark D, Micklem, Gos, Kawashima, Shuichi, Yamaguchi, Atsuko, Nakao, Mitsuteru, Yamamoto, Yasunori, Okamoto, Shinobu, Oouchida, Kenta, Chun, Hong-Woo, Aerts, Jan, Afzal, Hammad, Antezana, Erick, Arakawa, Kazuharu, Aranda, Bruno, Belleau, Francois, Bolleman, Jerven, Bonnal, Raoul JP, Chapman, Brad, Cock, Peter JA, Eriksson, Tore, Gordon, Paul MK, Goto, Naohisa, Hayashi, Kazuhiro, Horn, Heiko, Ishiwata, Ryosuke, Kaminuma, Eli, Kasprzyk, Arek, Kawaji, Hideya, Kido, Nobuhiro, Kim, Young Joo, Kinjo, Akira R, Konishi, Fumikazu, Kwon, Kyung-Hoon, Labarga, Alberto, Lamprecht, Anna-Lena, Lin, Yu, Lindenbaum, Pierre, McCarthy, Luke, Morita, Hideyuki, Murakami, Katsuhiko, Nagao, Koji, Nishida, Kozo, Nishimura, Kunihiro, Nishizawa, Tatsuya, Ogishima, Soichi, Ono, Keiichiro, Oshita, Kazuki, Park, Keun-Joon, Prins, Pjotr, Saito, Taro L, Samwald, Matthias, Satagopam, Venkata P, Shigemoto, Yasumasa, Smith, Richard, Splendiani, Andrea, Sugawara, Hideaki, Taylor, James, Vos, Rutger A, Withers, David, Yamasaki, Chisato, Zmasek, Christian M, Kawamoto, Shoko, Okubo, Kosaku, Asai, Kiyoshi, Takagi, Toshihisa
Published 2013