BioBenchmark Toyama 2012: an evaluation of the performance of triple stores on biological data

by Wu, Hongyan, Fujiwara, Toyofumi, Yamamoto, Yasunori, Bolleman, Jerven, Yamaguchi, Atsuko
Published 2014

Property Graph vs RDF Triple Store: A Comparison on Glycan Substructure Search

by Alocci, Davide, Mariethoz, Julien, Horlacher, Oliver, Bolleman, Jerven T., Campbell, Matthew P., Lisacek, Frederique
Published 2015

SPARQL-enabled identifier conversion with Identifiers.org

by Wimalaratne, Sarala M., Bolleman, Jerven, Juty, Nick, Katayama, Toshiaki, Dumontier, Michel, Redaschi, Nicole, Le Novère, Nicolas, Hermjakob, Henning, Laibe, Camille
Published 2015

FALDO: a semantic standard for describing the location of nucleotide and protein feature annotation

by Bolleman, Jerven T., Mungall, Christopher J., Strozzi, Francesco, Baran, Joachim, Dumontier, Michel, Bonnal, Raoul J. P., Buels, Robert, Hoehndorf, Robert, Fujisawa, Takatomo, Katayama, Toshiaki, Cock, Peter J. A.
Published 2016

Genetic Variations and Diseases in UniProtKB/Swiss-Prot: The Ins and Outs of Expert Manual Curation

by Famiglietti, Maria Livia, Estreicher, Anne, Gos, Arnaud, Bolleman, Jerven, Géhant, Sébastien, Breuza, Lionel, Bridge, Alan, Poux, Sylvain, Redaschi, Nicole, Bougueleret, Lydie, Xenarios, Ioannis
Published 2014

The EBI RDF platform: linked open data for the life sciences

by Jupp, Simon, Malone, James, Bolleman, Jerven, Brandizi, Marco, Davies, Mark, Garcia, Leyla, Gaulton, Anna, Gehant, Sebastien, Laibe, Camille, Redaschi, Nicole, Wimalaratne, Sarala M., Martin, Maria, Le Novère, Nicolas, Parkinson, Helen, Birney, Ewan, Jenkinson, Andrew M.
Published 2014

Introducing glycomics data into the Semantic Web

by Aoki-Kinoshita, Kiyoko F, Bolleman, Jerven, Campbell, Matthew P, Kawano, Shin, Kim, Jin-Dong, Lütteke, Thomas, Matsubara, Masaaki, Okuda, Shujiro, Ranzinger, Rene, Sawaki, Hiromichi, Shikanai, Toshihide, Shinmachi, Daisuke, Suzuki, Yoshinori, Toukach, Philip, Yamada, Issaku, Packer, Nicolle H, Narimatsu, Hisashi
Published 2013

The health care and life sciences community profile for dataset descriptions

by Dumontier, Michel, Gray, Alasdair J.G., Marshall, M. Scott, Alexiev, Vladimir, Ansell, Peter, Bader, Gary, Baran, Joachim, Bolleman, Jerven T., Callahan, Alison, Cruz-Toledo, José, Gaudet, Pascale, Gombocz, Erich A., Gonzalez-Beltran, Alejandra N., Groth, Paul, Haendel, Melissa, Ito, Maori, Jupp, Simon, Juty, Nick, Katayama, Toshiaki, Kobayashi, Norio, Krishnaswami, Kalpana, Laibe, Camille, Le Novère, Nicolas, Lin, Simon, Malone, James, Miller, Michael, Mungall, Christopher J., Rietveld, Laurens, Wimalaratne, Sarala M., Yamaguchi, Atsuko
Published 2016

The 3rd DBCLS BioHackathon: improving life science data integration with Semantic Web technologies

by Katayama, Toshiaki, Wilkinson, Mark D, Micklem, Gos, Kawashima, Shuichi, Yamaguchi, Atsuko, Nakao, Mitsuteru, Yamamoto, Yasunori, Okamoto, Shinobu, Oouchida, Kenta, Chun, Hong-Woo, Aerts, Jan, Afzal, Hammad, Antezana, Erick, Arakawa, Kazuharu, Aranda, Bruno, Belleau, Francois, Bolleman, Jerven, Bonnal, Raoul JP, Chapman, Brad, Cock, Peter JA, Eriksson, Tore, Gordon, Paul MK, Goto, Naohisa, Hayashi, Kazuhiro, Horn, Heiko, Ishiwata, Ryosuke, Kaminuma, Eli, Kasprzyk, Arek, Kawaji, Hideya, Kido, Nobuhiro, Kim, Young Joo, Kinjo, Akira R, Konishi, Fumikazu, Kwon, Kyung-Hoon, Labarga, Alberto, Lamprecht, Anna-Lena, Lin, Yu, Lindenbaum, Pierre, McCarthy, Luke, Morita, Hideyuki, Murakami, Katsuhiko, Nagao, Koji, Nishida, Kozo, Nishimura, Kunihiro, Nishizawa, Tatsuya, Ogishima, Soichi, Ono, Keiichiro, Oshita, Kazuki, Park, Keun-Joon, Prins, Pjotr, Saito, Taro L, Samwald, Matthias, Satagopam, Venkata P, Shigemoto, Yasumasa, Smith, Richard, Splendiani, Andrea, Sugawara, Hideaki, Taylor, James, Vos, Rutger A, Withers, David, Yamasaki, Chisato, Zmasek, Christian M, Kawamoto, Shoko, Okubo, Kosaku, Asai, Kiyoshi, Takagi, Toshihisa
Published 2013

BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains

by Katayama, Toshiaki, Wilkinson, Mark D, Aoki-Kinoshita, Kiyoko F, Kawashima, Shuichi, Yamamoto, Yasunori, Yamaguchi, Atsuko, Okamoto, Shinobu, Kawano, Shin, Kim, Jin-Dong, Wang, Yue, Wu, Hongyan, Kano, Yoshinobu, Ono, Hiromasa, Bono, Hidemasa, Kocbek, Simon, Aerts, Jan, Akune, Yukie, Antezana, Erick, Arakawa, Kazuharu, Aranda, Bruno, Baran, Joachim, Bolleman, Jerven, Bonnal, Raoul JP, Buttigieg, Pier Luigi, Campbell, Matthew P, Chen, Yi-an, Chiba, Hirokazu, Cock, Peter JA, Cohen, K Bretonnel, Constantin, Alexandru, Duck, Geraint, Dumontier, Michel, Fujisawa, Takatomo, Fujiwara, Toyofumi, Goto, Naohisa, Hoehndorf, Robert, Igarashi, Yoshinobu, Itaya, Hidetoshi, Ito, Maori, Iwasaki, Wataru, Kalaš, Matúš, Katoda, Takeo, Kim, Taehong, Kokubu, Anna, Komiyama, Yusuke, Kotera, Masaaki, Laibe, Camille, Lapp, Hilmar, Lütteke, Thomas, Marshall, M Scott, Mori, Takaaki, Mori, Hiroshi, Morita, Mizuki, Murakami, Katsuhiko, Nakao, Mitsuteru, Narimatsu, Hisashi, Nishide, Hiroyo, Nishimura, Yosuke, Nystrom-Persson, Johan, Ogishima, Soichi, Okamura, Yasunobu, Okuda, Shujiro, Oshita, Kazuki, Packer, Nicki H, Prins, Pjotr, Ranzinger, Rene, Rocca-Serra, Philippe, Sansone, Susanna, Sawaki, Hiromichi, Shin, Sung-Ho, Splendiani, Andrea, Strozzi, Francesco, Tadaka, Shu, Toukach, Philip, Uchiyama, Ikuo, Umezaki, Masahito, Vos, Rutger, Whetzel, Patricia L, Yamada, Issaku, Yamasaki, Chisato, Yamashita, Riu, York, William S, Zmasek, Christian M, Kawamoto, Shoko, Takagi, Toshihisa
Published 2014