New resources for functional analysis of omics data for the genus Aspergillus

by Nitsche, Benjamin M, Crabtree, Jonathan, Cerqueira, Gustavo C, Meyer, Vera, Ram, Arthur FJ, Wortman, Jennifer R
Published 2011

Using Sybil for interactive comparative genomics of microbes on the web

by Riley, David R., Angiuoli, Samuel V., Crabtree, Jonathan, Dunning Hotopp, Julie C., Tettelin, Hervé
Published 2012

Draft Genome Sequences of Human Pathogenic Fungus Geomyces pannorum Sensu Lato and Bat White Nose Syndrome Pathogen Geomyces (Pseudogymnoascus) destructans

by Chibucos, Marcus C., Crabtree, Jonathan, Nagaraj, Sushma, Chaturvedi, Sudha, Chaturvedi, Vishnu
Published 2013

Circleator: flexible circular visualization of genome-associated data with BioPerl and SVG

by Crabtree, Jonathan, Agrawal, Sonia, Mahurkar, Anup, Myers, Garry S., Rasko, David A., White, Owen
Published 2014

The Aspergillus Genome Database (AspGD): recent developments in comprehensive multispecies curation, comparative genomics and community resources

by Arnaud, Martha B., Cerqueira, Gustavo C., Inglis, Diane O., Skrzypek, Marek S., Binkley, Jonathan, Chibucos, Marcus C., Crabtree, Jonathan, Howarth, Clinton, Orvis, Joshua, Shah, Prachi, Wymore, Farrell, Binkley, Gail, Miyasato, Stuart R., Simison, Matt, Sherlock, Gavin, Wortman, Jennifer R.
Published 2012

Functional Dynamics of the Gut Microbiome in Elderly People during Probiotic Consumption

by Eloe-Fadrosh, Emiley A., Brady, Arthur, Crabtree, Jonathan, Drabek, Elliott F., Ma, Bing, Mahurkar, Anup, Ravel, Jacques, Haverkamp, Miriam, Fiorino, Anne-Maria, Botelho, Christine, Andreyeva, Irina, Hibberd, Patricia L., Fraser, Claire M.
Published 2015

Genomic Epidemiology of the Haitian Cholera Outbreak: a Single Introduction Followed by Rapid, Extensive, and Continued Spread Characterized the Onset of the Epidemic

by Eppinger, Mark, Pearson, Talima, Koenig, Sara S. K., Pearson, Ofori, Hicks, Nathan, Agrawal, Sonia, Sanjar, Fatemeh, Galens, Kevin, Daugherty, Sean, Crabtree, Jonathan, Hendriksen, Rene S., Price, Lance B., Upadhyay, Bishnu P., Shakya, Geeta, Fraser, Claire M., Ravel, Jacques, Keim, Paul S.
Published 2014

An integrated genomic and transcriptomic survey of mucormycosis-causing fungi

by Chibucos, Marcus C., Soliman, Sameh, Gebremariam, Teclegiorgis, Lee, Hongkyu, Daugherty, Sean, Orvis, Joshua, Shetty, Amol C., Crabtree, Jonathan, Hazen, Tracy H., Etienne, Kizee A., Kumari, Priti, O'Connor, Timothy D., Rasko, David A., Filler, Scott G., Fraser, Claire M., Lockhart, Shawn R., Skory, Christopher D., Ibrahim, Ashraf S., Bruno, Vincent M.
Published 2016

Genome Sequence of Babesia bovis and Comparative Analysis of Apicomplexan Hemoprotozoa

by Brayton, Kelly A, Lau, Audrey O. T, Herndon, David R, Hannick, Linda, Kappmeyer, Lowell S, Berens, Shawn J, Bidwell, Shelby L, Brown, Wendy C, Crabtree, Jonathan, Fadrosh, Doug, Feldblum, Tamara, Forberger, Heather A, Haas, Brian J, Howell, Jeanne M, Khouri, Hoda, Koo, Hean, Mann, David J, Norimine, Junzo, Paulsen, Ian T, Radune, Diana, Ren, Qinghu, Smith, Roger K, Suarez, Carlos E, White, Owen, Wortman, Jennifer R, Knowles, Donald P, McElwain, Terry F, Nene, Vishvanath M
Published 2007

Genome-wide diversity and gene expression profiling of Babesia microti isolates identify polymorphic genes that mediate host-pathogen interactions

by Silva, Joana C., Cornillot, Emmanuel, McCracken, Carrie, Usmani-Brown, Sahar, Dwivedi, Ankit, Ifeonu, Olukemi O., Crabtree, Jonathan, Gotia, Hanzel T., Virji, Azan Z., Reynes, Christelle, Colinge, Jacques, Kumar, Vidya, Lawres, Lauren, Pazzi, Joseph E., Pablo, Jozelyn V., Hung, Chris, Brancato, Jana, Kumari, Priti, Orvis, Joshua, Tretina, Kyle, Chibucos, Marcus, Ott, Sandy, Sadzewicz, Lisa, Sengamalay, Naomi, Shetty, Amol C., Su, Qi, Tallon, Luke, Fraser, Claire M., Frutos, Roger, Molina, Douglas M., Krause, Peter J., Ben Mamoun, Choukri
Published 2016

Genomic Islands in the Pathogenic Filamentous Fungus Aspergillus fumigatus

by Fedorova, Natalie D., Khaldi, Nora, Joardar, Vinita S., Maiti, Rama, Amedeo, Paolo, Anderson, Michael J., Crabtree, Jonathan, Silva, Joana C., Badger, Jonathan H., Albarraq, Ahmed, Angiuoli, Sam, Bussey, Howard, Bowyer, Paul, Cotty, Peter J., Dyer, Paul S., Egan, Amy, Galens, Kevin, Fraser-Liggett, Claire M., Haas, Brian J., Inman, Jason M., Kent, Richard, Lemieux, Sebastien, Malavazi, Iran, Orvis, Joshua, Roemer, Terry, Ronning, Catherine M., Sundaram, Jaideep P., Sutton, Granger, Turner, Geoff, Venter, J. Craig, White, Owen R., Whitty, Brett R., Youngman, Phil, Wolfe, Kenneth H., Goldman, Gustavo H., Wortman, Jennifer R., Jiang, Bo, Denning, David W., Nierman, William C.
Published 2008

Comparative Genomics of Emerging Human Ehrlichiosis Agents

by Dunning Hotopp, Julie C., Lin, Mingqun, Madupu, Ramana, Crabtree, Jonathan, Angiuoli, Samuel V, Eisen, Jonathan, Seshadri, Rekha, Ren, Qinghu, Wu, Martin, Utterback, Teresa R, Smith, Shannon, Lewis, Matthew, Khouri, Hoda, Zhang, Chunbin, Niu, Hua, Lin, Quan, Ohashi, Norio, Zhi, Ning, Nelson, William, Brinkac, Lauren M, Dodson, Robert J, Rosovitz, M. J, Sundaram, Jaideep, Daugherty, Sean C, Davidsen, Tanja, Durkin, Anthony S, Gwinn, Michelle, Haft, Daniel H, Selengut, Jeremy D, Sullivan, Steven A, Zafar, Nikhat, Zhou, Liwei, Benahmed, Faiza, Forberger, Heather, Halpin, Rebecca, Mulligan, Stephanie, Robinson, Jeffrey, White, Owen, Rikihisa, Yasuko, Tettelin, Hervé
Published 2006

Correction: Comparative Genomics of Emerging Human Ehrlichiosis Agents

by Dunning Hotopp, Julie C, Lin, Mingqun, Madupu, Ramana, Crabtree, Jonathan, Angiuoli, Samuel V, Eisen, Jonathan A, Seshadri, Rekha, Ren, Qinghu, Wu, Martin, Utterback, Teresa R, Smith, Shannon, Lewis, Matthew, Khouri, Hoda, Zhang, Chunbin, Niu, Hua, Lin, Quan, Ohashi, Norio, Zhi, Ning, Nelson, William, Brinkac, Lauren M, Dodson, Robert J, Rosovitz, M. J, Sundaram, Jaideep, Daugherty, Sean C, Davidsen, Tanja, Durkin, Anthony S, Gwinn, Michelle, Haft, Daniel H, Selengut, Jeremy D, Sullivan, Steven A, Zafar, Nikhat, Zhou, Liwei, Benahmed, Faiza, Forberger, Heather, Halpin, Rebecca, Mulligan, Stephanie, Robinson, Jeffrey, White, Owen, Rikihisa, Yasuko, Tettelin, Hervé
Published 2006

A framework for human microbiome research

by Methé, Barbara A., Nelson, Karen E., Pop, Mihai, Creasy, Heather H., Giglio, Michelle G., Huttenhower, Curtis, Gevers, Dirk, Petrosino, Joseph F., Abubucker, Sahar, Badger, Jonathan H., Chinwalla, Asif T., Earl, Ashlee M., FitzGerald, Michael G., Fulton, Robert S., Hallsworth-Pepin, Kymberlie, Lobos, Elizabeth A., Madupu, Ramana, Magrini, Vincent, Martin, John C., Mitreva, Makedonka, Muzny, Donna M., Sodergren, Erica J., Versalovic, James, Wollam, Aye M., Worley, Kim C., Wortman, Jennifer R., Young, Sarah K., Zeng, Qiandong, Aagaard, Kjersti M., Abolude, Olukemi O., Allen-Vercoe, Emma, Alm, Eric J., Alvarado, Lucia, Andersen, Gary L., Anderson, Scott, Appelbaum, Elizabeth, Arachchi, Harindra M., Armitage, Gary, Arze, Cesar A., Ayvaz, Tulin, Baker, Carl C., Begg, Lisa, Belachew, Tsegahiwot, Bhonagiri, Veena, Bihan, Monika, Blaser, Martin J., Bloom, Toby, Vivien Bonazzi, J., Brooks, Paul, Buck, Gregory A., Buhay, Christian J., Busam, Dana A., Campbell, Joseph L., Canon, Shane R., Cantarel, Brandi L., Chain, Patrick S., Chen, I-Min A., Chen, Lei, Chhibba, Shaila, Chu, Ken, Ciulla, Dawn M., Clemente, Jose C., Clifton, Sandra W., Conlan, Sean, Crabtree, Jonathan, Cutting, Mary A., Davidovics, Noam J., Davis, Catherine C., DeSantis, Todd Z., Deal, Carolyn, Delehaunty, Kimberley D., Dewhirst, Floyd E., Deych, Elena, Ding, Yan, Dooling, David J., Dugan, Shannon P., Dunne, Wm. Michael, Durkin, A. Scott, Edgar, Robert C., Erlich, Rachel L., Farmer, Candace N., Farrell, Ruth M., Faust, Karoline, Feldgarden, Michael, Felix, Victor M., Fisher, Sheila, Fodor, Anthony A., Forney, Larry, Foster, Leslie, Di Francesco, Valentina, Friedman, Jonathan, Friedrich, Dennis C., Fronick, Catrina C., Fulton, Lucinda L., Gao, Hongyu, Garcia, Nathalia, Giannoukos, Georgia, Giblin, Christina, Giovanni, Maria Y., Goldberg, Jonathan M., Goll, Johannes, Gonzalez, Antonio, Griggs, Allison, Gujja, Sharvari, Haas, Brian J., Hamilton, Holli A., Harris, Emily L., Hepburn, Theresa A., Herter, Brandi, Hoffmann, Diane E., Holder, Michael E., Howarth, Clinton, Huang, Katherine H., Huse, Susan M., Izard, Jacques, Jansson, Janet K., Jiang, Huaiyang, Jordan, Catherine, Joshi, Vandita, Katancik, James A., Keitel, Wendy A., Kelley, Scott T., Kells, Cristyn, Kinder-Haake, Susan, King, Nicholas B., Knight, Rob, Knights, Dan, Kong, Heidi H., Koren, Omry, Koren, Sergey, Kota, Karthik C., Kovar, Christie L., Kyrpides, Nikos C., La Rosa, Patricio S., Lee, Sandra L., Lemon, Katherine P., Lennon, Niall, Lewis, Cecil M., Lewis, Lora, Ley, Ruth E., Li, Kelvin, Liolios, Konstantinos, Liu, Bo, Liu, Yue, Lo, Chien-Chi, Lozupone, Catherine A., Lunsford, R. Dwayne, Madden, Tessa, Mahurkar, Anup A., Mannon, Peter J., Mardis, Elaine R., Markowitz, Victor M., Mavrommatis, Konstantinos, McCorrison, Jamison M., McDonald, Daniel, McEwen, Jean, McGuire, Amy L., McInnes, Pamela, Mehta, Teena, Mihindukulasuriya, Kathie A., Miller, Jason R., Minx, Patrick J., Newsham, Irene, Nusbaum, Chad, O’Laughlin, Michelle, Orvis, Joshua, Pagani, Ioanna, Palaniappan, Krishna, Patel, Shital M., Pearson, Matthew, Peterson, Jane, Podar, Mircea, Pohl, Craig, Pollard, Katherine S., Priest, Margaret E., Proctor, Lita M., Qin, Xiang, Raes, Jeroen, Ravel, Jacques, Reid, Jeffrey G., Rho, Mina, Rhodes, Rosamond, Riehle, Kevin P., Rivera, Maria C., Rodriguez-Mueller, Beltran, Rogers, Yu-Hui, Ross, Matthew C., Russ, Carsten, Sanka, Ravi K., Pamela Sankar, J., Sathirapongsasuti, Fah, Schloss, Jeffery A., Schloss, Patrick D., Schmidt, Thomas M., Scholz, Matthew, Schriml, Lynn, Schubert, Alyxandria M., Segata, Nicola, Segre, Julia A., Shannon, William D., Sharp, Richard R., Sharpton, Thomas J., Shenoy, Narmada, Sheth, Nihar U., Simone, Gina A., Singh, Indresh, Smillie, Chris S., Sobel, Jack D., Sommer, Daniel D., Spicer, Paul, Sutton, Granger G., Sykes, Sean M., Tabbaa, Diana G., Thiagarajan, Mathangi, Tomlinson, Chad M., Torralba, Manolito, Treangen, Todd J., Truty, Rebecca M., Vishnivetskaya, Tatiana A., Walker, Jason, Wang, Lu, Wang, Zhengyuan, Ward, Doyle V., Warren, Wesley, Watson, Mark A., Wellington, Christopher, Wetterstrand, Kris A., White, James R., Wilczek-Boney, Katarzyna, Wu, Yuan Qing, Wylie, Kristine M., Wylie, Todd, Yandava, Chandri, Ye, Liang, Ye, Yuzhen, Yooseph, Shibu, Youmans, Bonnie P., Zhang, Lan, Zhou, Yanjiao, Zhu, Yiming, Zoloth, Laurie, Zucker, Jeremy D., Birren, Bruce W., Gibbs, Richard A., Highlander, Sarah K., Weinstock, George M., Wilson, Richard K., White, Owen
Published 2012