Inferring Correlation Networks from Genomic Survey Data

by Friedman, Jonathan, Alm, Eric J.
Published 2012

Efficient algorithms for the reconciliation problem with gene duplication, horizontal transfer and loss

by Bansal, Mukul S., Alm, Eric J., Kellis, Manolis
Published 2012

Comparing Patterns of Natural Selection across Species Using Selective Signatures

by Shapiro, B. Jesse, Alm, Eric J
Published 2008

Tracking Strains in the Microbiome: Insights from Metagenomics and Models

by Brito, Ilana L., Alm, Eric J.
Published 2016

OpWise: Operons aid the identification of differentially expressed genes in bacterial microarray experiments

by Price, Morgan N, Arkin, Adam P, Alm, Eric J
Published 2006

Interruptions in gene expression drive highly expressed operons to the leading strand of DNA replication

by Price, Morgan N., Alm, Eric J., Arkin, Adam P.
Published 2005

The Life-Cycle of Operons

by Price, Morgan N, Arkin, Adam P, Alm, Eric J
Published 2006

Correction: The Life-Cycle of Operons

by Price, Morgan N, Arkin, Adam P, Alm, Eric J
Published 2006

Sympatric Speciation: When Is It Possible in Bacteria?

by Friedman, Jonathan, Alm, Eric J., Shapiro, B. Jesse
Published 2013

Improved gene tree error correction in the presence of horizontal gene transfer

by Bansal, Mukul S., Wu, Yi-Chieh, Alm, Eric J., Kellis, Manolis
Published 2015

Dissimilatory Metabolism of Nitrogen Oxides in Bacteria: Comparative Reconstruction of Transcriptional Networks

by Rodionov, Dmitry A, Dubchak, Inna L, Arkin, Adam P, Alm, Eric J, Gelfand, Mikhail S
Published 2005

A novel method for accurate operon predictions in all sequenced prokaryotes

by Price, Morgan N., Huang, Katherine H., Alm, Eric J., Arkin, Adam P.
Published 2005

Virtual Microfluidics for digital quantification and single-cell sequencing

by Xu, Liyi, Brito, Ilana L., Alm, Eric J., Blainey, Paul C.
Published 2016

Probiotic Bacteria Induce a ‘Glow of Health’

by Levkovich, Tatiana, Poutahidis, Theofilos, Smillie, Christopher, Varian, Bernard J., Ibrahim, Yassin M., Lakritz, Jessica R., Alm, Eric J., Erdman, Susan E.
Published 2013

Probiotic Microbes Sustain Youthful Serum Testosterone Levels and Testicular Size in Aging Mice

by Poutahidis, Theofilos, Springer, Alex, Levkovich, Tatiana, Qi, Peimin, Varian, Bernard J., Lakritz, Jessica R., Ibrahim, Yassin M., Chatzigiagkos, Antonis, Alm, Eric J., Erdman, Susan E.
Published 2014

Microbial Symbionts Accelerate Wound Healing via the Neuropeptide Hormone Oxytocin

by Poutahidis, Theofilos, Kearney, Sean M., Levkovich, Tatiana, Qi, Peimin, Varian, Bernard J., Lakritz, Jessica R., Ibrahim, Yassin M., Chatzigiagkos, Antonis, Alm, Eric J., Erdman, Susan E.
Published 2013

Adaptive radiation by waves of gene transfer leads to fine-scale resource partitioning in marine microbes

by Hehemann, Jan-Hendrik, Arevalo, Philip, Datta, Manoshi S., Yu, Xiaoqian, Corzett, Christopher H., Henschel, Andreas, Preheim, Sarah P., Timberlake, Sonia, Alm, Eric J., Polz, Martin F.
Published 2016

A Novel Analysis Method for Paired-Sample Microbial Ecology Experiments

by Olesen, Scott W., Vora, Suhani, Techtmann, Stephen M., Fortney, Julian L., Bastidas-Oyanedel, Juan R., Rodríguez, Jorge, Hazen, Terry C., Alm, Eric J.
Published 2016

Host lifestyle affects human microbiota on daily timescales

by David, Lawrence A, Materna, Arne C, Friedman, Jonathan, Campos-Baptista, Maria I, Blackburn, Matthew C, Perrotta, Allison, Erdman, Susan E, Alm, Eric J
Published 2014

Beneficial bacteria stimulate host immune cells to counteract dietary and genetic predisposition to mammary cancer in mice

by Lakritz, Jessica R, Poutahidis, Theofilos, Levkovich, Tatiana, Varian, Bernard J, Ibrahim, Yassin M, Chatzigiagkos, Antonis, Mirabal, Sheyla, Alm, Eric J, Erdman, Susan E
Published 2014