MetaRef: a pan-genomic database for comparative and community microbial genomics

by Huang, Katherine, Brady, Arthur, Mahurkar, Anup, White, Owen, Gevers, Dirk, Huttenhower, Curtis, Segata, Nicola
Published 2014

Unique gene program of rat small resistance mesenteric arteries as revealed by deep RNA sequencing

by Reho, John J, Shetty, Amol, Dippold, Rachael P, Mahurkar, Anup, Fisher, Steven A
Published 2015

Circleator: flexible circular visualization of genome-associated data with BioPerl and SVG

by Crabtree, Jonathan, Agrawal, Sonia, Mahurkar, Anup, Myers, Garry S., Rasko, David A., White, Owen
Published 2014

Map of open and closed chromatin domains in Drosophila genome

by Milon, Beatrice, Sun, Yezhou, Chang, Weizhong, Creasy, Todd, Mahurkar, Anup, Shetty, Amol, Nurminsky, Dmitry, Nurminskaya, Maria
Published 2014

The IGS Standard Operating Procedure for Automated Prokaryotic Annotation

by Galens, Kevin, Orvis, Joshua, Daugherty, Sean, Creasy, Heather H., Angiuoli, Sam, White, Owen, Wortman, Jennifer, Mahurkar, Anup, Giglio, Michelle Gwinn
Published 2011

RNA-Seq analysis of isolate- and growth phase-specific differences in the global transcriptomes of enteropathogenic Escherichia coli prototype isolates

by Hazen, Tracy H., Daugherty, Sean C., Shetty, Amol, Mahurkar, Anup A., White, Owen, Kaper, James B., Rasko, David A.
Published 2015

Brain feminization requires active repression of masculinization via DNA methylation

by Nugent, Bridget M., Wright, Christopher L., Shetty, Amol C., Hodes, Georgia E., Lenz, Kathryn M., Mahurkar, Anup, Russo, Scott J., Devine, Scott E., McCarthy, Margaret M.
Published 2015

Simultaneous Transcriptional Profiling of Bacteria and Their Host Cells

by Humphrys, Michael S., Creasy, Todd, Sun, Yezhou, Shetty, Amol C., Chibucos, Marcus C., Drabek, Elliott F., Fraser, Claire M., Farooq, Umar, Sengamalay, Naomi, Ott, Sandy, Shou, Huizhong, Bavoil, Patrik M., Mahurkar, Anup, Myers, Garry S. A.
Published 2013

Functional Dynamics of the Gut Microbiome in Elderly People during Probiotic Consumption

by Eloe-Fadrosh, Emiley A., Brady, Arthur, Crabtree, Jonathan, Drabek, Elliott F., Ma, Bing, Mahurkar, Anup, Ravel, Jacques, Haverkamp, Miriam, Fiorino, Anne-Maria, Botelho, Christine, Andreyeva, Irina, Hibberd, Patricia L., Fraser, Claire M.
Published 2015

MNKs act as a regulatory switch for eIF4E1 and eIF4E3 driven mRNA translation in DLBCL

by Landon, Ari L., Muniandy, Parameswary A., Shetty, Amol C., Lehrmann, Elin, Volpon, Laurent, Houng, Simone, Zhang, Yongqing, Dai, Bojie, Peroutka, Raymond, Mazan-Mamczarz, Krystyna, Steinhardt, James, Mahurkar, Anup, Becker, Kevin G., Borden, Katherine L., Gartenhaus, Ronald B.
Published 2014

A framework for human microbiome research

by Methé, Barbara A., Nelson, Karen E., Pop, Mihai, Creasy, Heather H., Giglio, Michelle G., Huttenhower, Curtis, Gevers, Dirk, Petrosino, Joseph F., Abubucker, Sahar, Badger, Jonathan H., Chinwalla, Asif T., Earl, Ashlee M., FitzGerald, Michael G., Fulton, Robert S., Hallsworth-Pepin, Kymberlie, Lobos, Elizabeth A., Madupu, Ramana, Magrini, Vincent, Martin, John C., Mitreva, Makedonka, Muzny, Donna M., Sodergren, Erica J., Versalovic, James, Wollam, Aye M., Worley, Kim C., Wortman, Jennifer R., Young, Sarah K., Zeng, Qiandong, Aagaard, Kjersti M., Abolude, Olukemi O., Allen-Vercoe, Emma, Alm, Eric J., Alvarado, Lucia, Andersen, Gary L., Anderson, Scott, Appelbaum, Elizabeth, Arachchi, Harindra M., Armitage, Gary, Arze, Cesar A., Ayvaz, Tulin, Baker, Carl C., Begg, Lisa, Belachew, Tsegahiwot, Bhonagiri, Veena, Bihan, Monika, Blaser, Martin J., Bloom, Toby, Vivien Bonazzi, J., Brooks, Paul, Buck, Gregory A., Buhay, Christian J., Busam, Dana A., Campbell, Joseph L., Canon, Shane R., Cantarel, Brandi L., Chain, Patrick S., Chen, I-Min A., Chen, Lei, Chhibba, Shaila, Chu, Ken, Ciulla, Dawn M., Clemente, Jose C., Clifton, Sandra W., Conlan, Sean, Crabtree, Jonathan, Cutting, Mary A., Davidovics, Noam J., Davis, Catherine C., DeSantis, Todd Z., Deal, Carolyn, Delehaunty, Kimberley D., Dewhirst, Floyd E., Deych, Elena, Ding, Yan, Dooling, David J., Dugan, Shannon P., Dunne, Wm. Michael, Durkin, A. Scott, Edgar, Robert C., Erlich, Rachel L., Farmer, Candace N., Farrell, Ruth M., Faust, Karoline, Feldgarden, Michael, Felix, Victor M., Fisher, Sheila, Fodor, Anthony A., Forney, Larry, Foster, Leslie, Di Francesco, Valentina, Friedman, Jonathan, Friedrich, Dennis C., Fronick, Catrina C., Fulton, Lucinda L., Gao, Hongyu, Garcia, Nathalia, Giannoukos, Georgia, Giblin, Christina, Giovanni, Maria Y., Goldberg, Jonathan M., Goll, Johannes, Gonzalez, Antonio, Griggs, Allison, Gujja, Sharvari, Haas, Brian J., Hamilton, Holli A., Harris, Emily L., Hepburn, Theresa A., Herter, Brandi, Hoffmann, Diane E., Holder, Michael E., Howarth, Clinton, Huang, Katherine H., Huse, Susan M., Izard, Jacques, Jansson, Janet K., Jiang, Huaiyang, Jordan, Catherine, Joshi, Vandita, Katancik, James A., Keitel, Wendy A., Kelley, Scott T., Kells, Cristyn, Kinder-Haake, Susan, King, Nicholas B., Knight, Rob, Knights, Dan, Kong, Heidi H., Koren, Omry, Koren, Sergey, Kota, Karthik C., Kovar, Christie L., Kyrpides, Nikos C., La Rosa, Patricio S., Lee, Sandra L., Lemon, Katherine P., Lennon, Niall, Lewis, Cecil M., Lewis, Lora, Ley, Ruth E., Li, Kelvin, Liolios, Konstantinos, Liu, Bo, Liu, Yue, Lo, Chien-Chi, Lozupone, Catherine A., Lunsford, R. Dwayne, Madden, Tessa, Mahurkar, Anup A., Mannon, Peter J., Mardis, Elaine R., Markowitz, Victor M., Mavrommatis, Konstantinos, McCorrison, Jamison M., McDonald, Daniel, McEwen, Jean, McGuire, Amy L., McInnes, Pamela, Mehta, Teena, Mihindukulasuriya, Kathie A., Miller, Jason R., Minx, Patrick J., Newsham, Irene, Nusbaum, Chad, O’Laughlin, Michelle, Orvis, Joshua, Pagani, Ioanna, Palaniappan, Krishna, Patel, Shital M., Pearson, Matthew, Peterson, Jane, Podar, Mircea, Pohl, Craig, Pollard, Katherine S., Priest, Margaret E., Proctor, Lita M., Qin, Xiang, Raes, Jeroen, Ravel, Jacques, Reid, Jeffrey G., Rho, Mina, Rhodes, Rosamond, Riehle, Kevin P., Rivera, Maria C., Rodriguez-Mueller, Beltran, Rogers, Yu-Hui, Ross, Matthew C., Russ, Carsten, Sanka, Ravi K., Pamela Sankar, J., Sathirapongsasuti, Fah, Schloss, Jeffery A., Schloss, Patrick D., Schmidt, Thomas M., Scholz, Matthew, Schriml, Lynn, Schubert, Alyxandria M., Segata, Nicola, Segre, Julia A., Shannon, William D., Sharp, Richard R., Sharpton, Thomas J., Shenoy, Narmada, Sheth, Nihar U., Simone, Gina A., Singh, Indresh, Smillie, Chris S., Sobel, Jack D., Sommer, Daniel D., Spicer, Paul, Sutton, Granger G., Sykes, Sean M., Tabbaa, Diana G., Thiagarajan, Mathangi, Tomlinson, Chad M., Torralba, Manolito, Treangen, Todd J., Truty, Rebecca M., Vishnivetskaya, Tatiana A., Walker, Jason, Wang, Lu, Wang, Zhengyuan, Ward, Doyle V., Warren, Wesley, Watson, Mark A., Wellington, Christopher, Wetterstrand, Kris A., White, James R., Wilczek-Boney, Katarzyna, Wu, Yuan Qing, Wylie, Kristine M., Wylie, Todd, Yandava, Chandri, Ye, Liang, Ye, Yuzhen, Yooseph, Shibu, Youmans, Bonnie P., Zhang, Lan, Zhou, Yanjiao, Zhu, Yiming, Zoloth, Laurie, Zucker, Jeremy D., Birren, Bruce W., Gibbs, Richard A., Highlander, Sarah K., Weinstock, George M., Wilson, Richard K., White, Owen
Published 2012