Draft Genome Sequences of Human Pathogenic Fungus Geomyces pannorum Sensu Lato and Bat White Nose Syndrome Pathogen Geomyces (Pseudogymnoascus) destructans

by Chibucos, Marcus C., Crabtree, Jonathan, Nagaraj, Sushma, Chaturvedi, Sudha, Chaturvedi, Vishnu
Published 2013

Draft Genome Sequence of Mortierella alpina Isolate CDC-B6842

by Etienne, Kizee A., Chibucos, Marcus C., Su, Qi, Orvis, Joshua, Daugherty, Sean, Ott, Sandra, Sengamalay, Naomi A., Fraser, Claire M., Lockhart, Shawn R., Bruno, Vincent M.
Published 2014

Single molecule sequencing and genome assembly of a clinical specimen of Loa loa, the causative agent of loiasis

by Tallon, Luke J, Liu, Xinyue, Bennuru, Sasisekhar, Chibucos, Marcus C, Godinez, Alvaro, Ott, Sandra, Zhao, Xuechu, Sadzewicz, Lisa, Fraser, Claire M, Nutman, Thomas B, Dunning Hotopp, Julie C
Published 2014

An ontology for microbial phenotypes

by Chibucos, Marcus C, Zweifel, Adrienne E, Herrera, Jonathan C, Meza, William, Eslamfam, Shabnam, Uetz, Peter, Siegele, Deborah A, Hu, James C, Giglio, Michelle G
Published 2014

Standardized description of scientific evidence using the Evidence Ontology (ECO)

by Chibucos, Marcus C., Mungall, Christopher J., Balakrishnan, Rama, Christie, Karen R., Huntley, Rachael P., White, Owen, Blake, Judith A., Lewis, Suzanna E., Giglio, Michelle
Published 2014

From data repositories to submission portals: rethinking the role of domain-specific databases in CollecTF

by Kılıç, Sefa, Sagitova, Dinara M., Wolfish, Shoshannah, Bely, Benoit, Courtot, Mélanie, Ciufo, Stacy, Tatusova, Tatiana, O’Donovan, Claire, Chibucos, Marcus C., Martin, Maria J., Erill, Ivan
Published 2016

The Aspergillus Genome Database (AspGD): recent developments in comprehensive multispecies curation, comparative genomics and community resources

by Arnaud, Martha B., Cerqueira, Gustavo C., Inglis, Diane O., Skrzypek, Marek S., Binkley, Jonathan, Chibucos, Marcus C., Crabtree, Jonathan, Howarth, Clinton, Orvis, Joshua, Shah, Prachi, Wymore, Farrell, Binkley, Gail, Miyasato, Stuart R., Simison, Matt, Sherlock, Gavin, Wortman, Jennifer R.
Published 2012

Simultaneous Transcriptional Profiling of Bacteria and Their Host Cells

by Humphrys, Michael S., Creasy, Todd, Sun, Yezhou, Shetty, Amol C., Chibucos, Marcus C., Drabek, Elliott F., Fraser, Claire M., Farooq, Umar, Sengamalay, Naomi, Ott, Sandy, Shou, Huizhong, Bavoil, Patrik M., Mahurkar, Anup, Myers, Garry S. A.
Published 2013

The Confidence Information Ontology: a step towards a standard for asserting confidence in annotations

by Bastian, Frederic B., Chibucos, Marcus C., Gaudet, Pascale, Giglio, Michelle, Holliday, Gemma L., Huang, Hong, Lewis, Suzanna E., Niknejad, Anne, Orchard, Sandra, Poux, Sylvain, Skunca, Nives, Robinson-Rechavi, Marc
Published 2015

Rapid transcriptome sequencing of an invasive pest, the brown marmorated stink bug Halyomorpha halys

by Ioannidis, Panagiotis, Lu, Yong, Kumar, Nikhil, Creasy, Todd, Daugherty, Sean, Chibucos, Marcus C, Orvis, Joshua, Shetty, Amol, Ott, Sandra, Flowers, Melissa, Sengamalay, Naomi, Tallon, Luke J, Pick, Leslie, Hotopp, Julie C Dunning
Published 2014

An integrated genomic and transcriptomic survey of mucormycosis-causing fungi

by Chibucos, Marcus C., Soliman, Sameh, Gebremariam, Teclegiorgis, Lee, Hongkyu, Daugherty, Sean, Orvis, Joshua, Shetty, Amol C., Crabtree, Jonathan, Hazen, Tracy H., Etienne, Kizee A., Kumari, Priti, O'Connor, Timothy D., Rasko, David A., Filler, Scott G., Fraser, Claire M., Lockhart, Shawn R., Skory, Christopher D., Ibrahim, Ashraf S., Bruno, Vincent M.
Published 2016

Implementation of a Pan-Genomic Approach to Investigate Holobiont-Infecting Microbe Interaction: A Case Report of a Leukemic Patient with Invasive Mucormycosis

by Shelburne, Samuel A., Ajami, Nadim J., Chibucos, Marcus C., Beird, Hannah C., Tarrand, Jeffrey, Galloway-Peña, Jessica, Albert, Nathan, Chemaly, Roy F., Ghantoji, Shashank S., Marsh, Lisa, Pemmaraju, Naveen, Andreeff, Michael, Shpall, Elizabeth J., Wargo, Jennifer A., Rezvani, Katayoun, Alousi, Amin, Bruno, Vincent M., Futreal, Phillip A., Petrosino, Joseph F., Kontoyiannis, Dimitrios P.
Published 2015

Genome-wide diversity and gene expression profiling of Babesia microti isolates identify polymorphic genes that mediate host-pathogen interactions

by Silva, Joana C., Cornillot, Emmanuel, McCracken, Carrie, Usmani-Brown, Sahar, Dwivedi, Ankit, Ifeonu, Olukemi O., Crabtree, Jonathan, Gotia, Hanzel T., Virji, Azan Z., Reynes, Christelle, Colinge, Jacques, Kumar, Vidya, Lawres, Lauren, Pazzi, Joseph E., Pablo, Jozelyn V., Hung, Chris, Brancato, Jana, Kumari, Priti, Orvis, Joshua, Tretina, Kyle, Chibucos, Marcus, Ott, Sandy, Sadzewicz, Lisa, Sengamalay, Naomi, Shetty, Amol C., Su, Qi, Tallon, Luke, Fraser, Claire M., Frutos, Roger, Molina, Douglas M., Krause, Peter J., Ben Mamoun, Choukri
Published 2016

The Ontology for Biomedical Investigations

by Bandrowski, Anita, Brinkman, Ryan, Brochhausen, Mathias, Brush, Matthew H., Bug, Bill, Chibucos, Marcus C., Clancy, Kevin, Courtot, Mélanie, Derom, Dirk, Dumontier, Michel, Fan, Liju, Fostel, Jennifer, Fragoso, Gilberto, Gibson, Frank, Gonzalez-Beltran, Alejandra, Haendel, Melissa A., He, Yongqun, Heiskanen, Mervi, Hernandez-Boussard, Tina, Jensen, Mark, Lin, Yu, Lister, Allyson L., Lord, Phillip, Malone, James, Manduchi, Elisabetta, McGee, Monnie, Morrison, Norman, Overton, James A., Parkinson, Helen, Peters, Bjoern, Rocca-Serra, Philippe, Ruttenberg, Alan, Sansone, Susanna-Assunta, Scheuermann, Richard H., Schober, Daniel, Smith, Barry, Soldatova, Larisa N., Stoeckert, Christian J., Taylor, Chris F., Torniai, Carlo, Turner, Jessica A., Vita, Randi, Whetzel, Patricia L., Zheng, Jie
Published 2016