A Review of Bacteria-Animal Lateral Gene Transfer May Inform Our Understanding of Diseases like Cancer

by Robinson, Kelly M., Sieber, Karsten B., Dunning Hotopp, Julie C.
Published 2013

Modeling the integration of bacterial rRNA fragments into the human cancer genome

by Sieber, Karsten B., Gajer, Pawel, Dunning Hotopp, Julie C.
Published 2016

Improving pan-genome annotation using whole genome multiple alignment

by Angiuoli, Samuel V, Dunning Hotopp, Julie C, Salzberg, Steven L, Tettelin, Hervé
Published 2011

Using Sybil for interactive comparative genomics of microbes on the web

by Riley, David R., Angiuoli, Samuel V., Crabtree, Jonathan, Dunning Hotopp, Julie C., Tettelin, Hervé
Published 2012

Efficient subtraction of insect rRNA prior to transcriptome analysis of Wolbachia-Drosophila lateral gene transfer

by Kumar, Nikhil, Creasy, Todd, Sun, Yezhou, Flowers, Melissa, Tallon, Luke J, Dunning Hotopp, Julie C
Published 2012

Bacteria-Human Somatic Cell Lateral Gene Transfer Is Enriched in Cancer Samples

by Riley, David R., Sieber, Karsten B., Robinson, Kelly M., White, James Robert, Ganesan, Ashwinkumar, Nourbakhsh, Syrus, Dunning Hotopp, Julie C.
Published 2013

Streptococcus pneumoniae in Biofilms Are Unable to Cause Invasive Disease Due to Altered Virulence Determinant Production

by Sanchez, Carlos J., Kumar, Nikhil, Lizcano, Anel, Shivshankar, Pooja, Dunning Hotopp, Julie C., Jorgensen, James H., Tettelin, Hervé, Orihuela, Carlos J.
Published 2011

Correction: Serendipitous discovery of Wolbachia genomes in multiple Drosophila species

by Salzberg, Steven L, Dunning Hotopp, Julie C, Delcher, Arthur L, Pop, Mihai, Smith, Douglas R, Eisen, Michael B, Nelson, William C
Published 2005

Brood Ball-Mediated Transmission of Microbiome Members in the Dung Beetle, Onthophagus taurus (Coleoptera: Scarabaeidae)

by Estes, Anne M., Hearn, David J., Snell-Rood, Emilie C., Feindler, Michele, Feeser, Karla, Abebe, Tselotie, Dunning Hotopp, Julie C., Moczek, Armin P.
Published 2013

Efficient Enrichment of Bacterial mRNA from Host-Bacteria Total RNA Samples

by Kumar, Nikhil, Lin, Mingqun, Zhao, Xuechu, Ott, Sandra, Santana-Cruz, Ivette, Daugherty, Sean, Rikihisa, Yasuko, Sadzewicz, Lisa, Tallon, Luke J., Fraser, Claire M., Dunning Hotopp, Julie C.
Published 2016

Single molecule sequencing and genome assembly of a clinical specimen of Loa loa, the causative agent of loiasis

by Tallon, Luke J, Liu, Xinyue, Bennuru, Sasisekhar, Chibucos, Marcus C, Godinez, Alvaro, Ott, Sandra, Zhao, Xuechu, Sadzewicz, Lisa, Fraser, Claire M, Nutman, Thomas B, Dunning Hotopp, Julie C
Published 2014

Extensive duplication of the Wolbachia DNA in chromosome four of Drosophila ananassae

by Klasson, Lisa, Kumar, Nikhil, Bromley, Robin, Sieber, Karsten, Flowers, Melissa, Ott, Sandra H, Tallon, Luke J, Andersson, Siv G E, Dunning Hotopp, Julie C
Published 2014

Transcriptional adaptation of pneumococci and human pharyngeal cells in the presence of a virus infection

by Kimaro Mlacha, Sheila Z, Peret, Teresa C T, Kumar, Nikhil, Romero-Steiner, Sandra, Dunning Hotopp, Julie C, Ishmael, Nadeeza, Grinblat-Huse, Valerie, Riley, David R, Erdman, Dean D, Carlone, George M, Sampson, Jacquelyn, Scott, J Anthony G, Tettelin, Hervé
Published 2013

Extensively duplicated and transcriptionally active recent lateral gene transfer from a bacterial Wolbachia endosymbiont to its host filarial nematode Brugia malayi

by Ioannidis, Panagiotis, Johnston, Kelly L, Riley, David R, Kumar, Nikhil, White, James R, Olarte, Karen T, Ott, Sandra, Tallon, Luke J, Foster, Jeremy M, Taylor, Mark J, Dunning Hotopp, Julie C
Published 2013

Genomic Epidemiology of Hypervirulent Serogroup W, ST-11 Neisseria meningitidis

by Mustapha, Mustapha M., Marsh, Jane W., Krauland, Mary G., Fernandez, Jorge O., de Lemos, Ana Paula S., Dunning Hotopp, Julie C., Wang, Xin, Mayer, Leonard W., Lawrence, Jeffrey G., Hiller, N. Luisa, Harrison, Lee H.
Published 2015

Structure and dynamics of the pan-genome of Streptococcus pneumoniae and closely related species

by Donati, Claudio, Hiller, N Luisa, Tettelin, Hervé, Muzzi, Alessandro, Croucher, Nicholas J, Angiuoli, Samuel V, Oggioni, Marco, Dunning Hotopp, Julie C, Hu, Fen Z, Riley, David R, Covacci, Antonello, Mitchell, Tim J, Bentley, Stephen D, Kilian, Morgens, Ehrlich, Garth D, Rappuoli, Rino, Moxon, E Richard, Masignani, Vega
Published 2010

Phenotypic, genomic, and transcriptional characterization of Streptococcus pneumoniae interacting with human pharyngeal cells

by Kimaro Mlacha, Sheila Z, Romero-Steiner, Sandra, Dunning Hotopp, Julie C, Kumar, Nikhil, Ishmael, Nadeeza, Riley, David R, Farooq, Umar, Creasy, Todd H, Tallon, Luke J, Liu, Xinyue, Goldsmith, Cynthia S, Sampson, Jacquelyn, Carlone, George M, Hollingshead, Susan K, Scott, J Anthony G, Tettelin, Hervé
Published 2013

Comparative Genomics of Emerging Human Ehrlichiosis Agents

by Dunning Hotopp, Julie C., Lin, Mingqun, Madupu, Ramana, Crabtree, Jonathan, Angiuoli, Samuel V, Eisen, Jonathan, Seshadri, Rekha, Ren, Qinghu, Wu, Martin, Utterback, Teresa R, Smith, Shannon, Lewis, Matthew, Khouri, Hoda, Zhang, Chunbin, Niu, Hua, Lin, Quan, Ohashi, Norio, Zhi, Ning, Nelson, William, Brinkac, Lauren M, Dodson, Robert J, Rosovitz, M. J, Sundaram, Jaideep, Daugherty, Sean C, Davidsen, Tanja, Durkin, Anthony S, Gwinn, Michelle, Haft, Daniel H, Selengut, Jeremy D, Sullivan, Steven A, Zafar, Nikhat, Zhou, Liwei, Benahmed, Faiza, Forberger, Heather, Halpin, Rebecca, Mulligan, Stephanie, Robinson, Jeffrey, White, Owen, Rikihisa, Yasuko, Tettelin, Hervé
Published 2006

Correction: Comparative Genomics of Emerging Human Ehrlichiosis Agents

by Dunning Hotopp, Julie C, Lin, Mingqun, Madupu, Ramana, Crabtree, Jonathan, Angiuoli, Samuel V, Eisen, Jonathan A, Seshadri, Rekha, Ren, Qinghu, Wu, Martin, Utterback, Teresa R, Smith, Shannon, Lewis, Matthew, Khouri, Hoda, Zhang, Chunbin, Niu, Hua, Lin, Quan, Ohashi, Norio, Zhi, Ning, Nelson, William, Brinkac, Lauren M, Dodson, Robert J, Rosovitz, M. J, Sundaram, Jaideep, Daugherty, Sean C, Davidsen, Tanja, Durkin, Anthony S, Gwinn, Michelle, Haft, Daniel H, Selengut, Jeremy D, Sullivan, Steven A, Zafar, Nikhat, Zhou, Liwei, Benahmed, Faiza, Forberger, Heather, Halpin, Rebecca, Mulligan, Stephanie, Robinson, Jeffrey, White, Owen, Rikihisa, Yasuko, Tettelin, Hervé
Published 2006