Transposable elements reveal a stem cell-specific class of long noncoding RNAs

by Kelley, David, Rinn, John
Published 2012

'Oming in on RNA–protein interactions

by Rinn, John L, Ule, Jernej
Published 2014

A Keystone for ncRNA

by Hacisuleyman, Ezgi, Cabili, Moran N, Rinn, John L
Published 2012

CRISPR Display: A modular method for locus-specific targeting of long noncoding RNAs and synthetic RNA devices in vivo

by Shechner, David M., Hacisüleyman, Ezgi, Younger, Scott T., Rinn, John L.
Published 2015

Anatomic Demarcation by Positional Variation in Fibroblast Gene Expression Programs

by Rinn, John L, Bondre, Chanda, Gladstone, Hayes B, Brown, Patrick O, Chang, Howard Y
Published 2006

Improving RNA-Seq expression estimates by correcting for fragment bias

by Roberts, Adam, Trapnell, Cole, Donaghey, Julie, Rinn, John L, Pachter, Lior
Published 2011

Strand-specific RNA sequencing in Plasmodium falciparum malaria identifies developmentally regulated long non-coding RNA and circular RNA

by Broadbent, Kate M, Broadbent, Jill C, Ribacke, Ulf, Wirth, Dyann, Rinn, John L, Sabeti, Pardis C
Published 2015

Function and evolution of local repeats in the Firre locus

by Hacisuleyman, Ezgi, Shukla, Chinmay J., Weiner, Catherine L., Rinn, John L.
Published 2016

Widespread RNA binding by chromatin-associated proteins

by G Hendrickson, David, Kelley, David R., Tenen, Danielle, Bernstein, Bradley, Rinn, John L.
Published 2016

Integrative genomic analysis reveals widespread enhancer regulation by p53 in response to DNA damage

by Younger, Scott T., Kenzelmann-Broz, Daniela, Jung, Heiyoun, Attardi, Laura D., Rinn, John L.
Published 2015

Transposable elements modulate human RNA abundance and splicing via specific RNA-protein interactions

by Kelley, David R, Hendrickson, David G, Tenen, Danielle, Rinn, John L
Published 2014

Identification of proteins binding coding and non-coding human RNAs using protein microarrays

by Siprashvili, Zurab, Webster, Dan E, Kretz, Markus, Johnston, Danielle, Rinn, John L, Chang, Howard Y, Khavari, Paul A
Published 2012

RNase-mediated protein footprint sequencing reveals protein-binding sites throughout the human transcriptome

by Silverman, Ian M, Li, Fan, Alexander, Anissa, Goff, Loyal, Trapnell, Cole, Rinn, John L, Gregory, Brian D
Published 2014

A global transcriptional analysis of Plasmodium falciparum malaria reveals a novel family of telomere-associated lncRNAs

by Broadbent, Kate M, Park, Daniel, Wolf, Ashley R, Van Tyne, Daria, Sims, Jennifer S, Ribacke, Ulf, Volkman, Sarah, Duraisingh, Manoj, Wirth, Dyann, Sabeti, Pardis C, Rinn, John L
Published 2011

Genome-Wide Analysis of KAP1 Binding Suggests Autoregulation of KRAB-ZNFs

by O'Geen, Henriette, Squazzo, Sharon L, Iyengar, Sushma, Blahnik, Kim, Rinn, John L, Chang, Howard Y, Green, Roland, Farnham, Peggy J
Published 2007

Genomics in 2011: challenges and opportunities

by Adams, David J, Berger, Bonnie, Harismendy, Olivier, Huttenhower, Curtis, Liu, X Shirley, Myers, Chad L, Oshlack, Alicia, Rinn, John L, Walhout, Albertha J M
Published 2011

CORRECTION

by DeVoss, Jason, Hou, Yafei, Johannes, Kellsey, Lu, Wen, Liou, Gregory I., Rinn, John, Chang, Howard, Caspi, Rachel R., Fong, Lawrence, Anderson, Mark S.
Published 2007

Spontaneous autoimmunity prevented by thymic expression of a single self-antigen

by DeVoss, Jason, Hou, Yafei, Johannes, Kellsey, Lu, Wen, Liou, Gregory I., Rinn, John, Chang, Howard, Caspi, Rachel, Fong, Lawrence, Anderson, Mark S.
Published 2006

Peptidomic discovery of short open reading frame-encoded peptides in human cells

by Slavoff, Sarah A., Mitchell, Andrew J., Schwaid, Adam G., Cabili, Moran N., Ma, Jiao, Levin, Joshua Z., Karger, Amir D., Budnik, Bogdan A., Rinn, John L., Saghatelian, Alan
Published 2012

Integrative analyses reveal a long noncoding RNA-mediated sponge regulatory network in prostate cancer

by Du, Zhou, Sun, Tong, Hacisuleyman, Ezgi, Fei, Teng, Wang, Xiaodong, Brown, Myles, Rinn, John L., Lee, Mary Gwo-Shu, Chen, Yiwen, Kantoff, Philip W., Liu, X. Shirley
Published 2016