Genome-wide scans provide evidence for positive selection of genes implicated in Lassa fever

by Andersen, Kristian G., Shylakhter, Ilya, Tabrizi, Shervin, Grossman, Sharon R., Happi, Christian T., Sabeti, Pardis C.
Published 2012

Strand-specific RNA sequencing in Plasmodium falciparum malaria identifies developmentally regulated long non-coding RNA and circular RNA

by Broadbent, Kate M, Broadbent, Jill C, Ribacke, Ulf, Wirth, Dyann, Rinn, John L, Sabeti, Pardis C
Published 2015

FRESCo: finding regions of excess synonymous constraint in diverse viruses

by Sealfon, Rachel S, Lin, Michael F, Jungreis, Irwin, Wolf, Maxim Y, Kellis, Manolis, Sabeti, Pardis C
Published 2015

Unbiased Deep Sequencing of RNA Viruses from Clinical Samples

by Matranga, Christian B., Gladden-Young, Adrianne, Qu, James, Winnicki, Sarah, Nosamiefan, Dolo, Levin, Joshua Z., Sabeti, Pardis C.
Published 2016

A global transcriptional analysis of Plasmodium falciparum malaria reveals a novel family of telomere-associated lncRNAs

by Broadbent, Kate M, Park, Daniel, Wolf, Ashley R, Van Tyne, Daria, Sims, Jennifer S, Ribacke, Ulf, Volkman, Sarah, Duraisingh, Manoj, Wirth, Dyann, Sabeti, Pardis C, Rinn, John L
Published 2011

Identification of Two Independent Risk Factors for Lupus within the MHC in United Kingdom Families

by Fernando, Michelle M. A, Stevens, Christine R, Sabeti, Pardis C, Walsh, Emily C, McWhinnie, Alasdair J. M, Shah, Anila, Green, Todd, Rioux, John D, Vyse, Timothy J
Published 2007

High depth, whole-genome sequencing of cholera isolates from Haiti and the Dominican Republic

by Sealfon, Rachel, Gire, Stephen, Ellis, Crystal, Calderwood, Stephen, Qadri, Firdausi, Hensley, Lisa, Kellis, Manolis, Ryan, Edward T, LaRocque, Regina C, Harris, Jason B, Sabeti, Pardis C
Published 2012

Positive Selection of a Pre-Expansion CAG Repeat of the Human SCA2 Gene

by Yu, Fuli, Sabeti, Pardis C, Hardenbol, Paul, Fu, Qing, Fry, Ben, Lu, Xiuhua, Ghose, Sy, Vega, Richard, Perez, Ag, Pasternak, Shiran, Leal, Suzanne M, Willis, Thomas D, Nelson, David L, Belmont, John, Gibbs, Richard A
Published 2005

The Case for Selection at CCR5-Δ32

by Sabeti, Pardis C, Walsh, Emily, Schaffner, Steve F, Varilly, Patrick, Fry, Ben, Hutcheson, Holli B, Cullen, Mike, Mikkelsen, Tarjei S, Roy, Jessica, Patterson, Nick, Cooper, Richard, Reich, David, Altshuler, David, O'Brien, Stephen, Lander, Eric S
Published 2005

Standards for Sequencing Viral Genomes in the Era of High-Throughput Sequencing

by Ladner, Jason T., Beitzel, Brett, Chain, Patrick S. G., Davenport, Matthew G., Donaldson, Eric, Frieman, Matthew, Kugelman, Jeffrey, Kuhn, Jens H., O’Rear, Jules, Sabeti, Pardis C., Wentworth, David E., Wiley, Michael R., Yu, Guo-Yun, Sozhamannan, Shanmuga, Bradburne, Christopher, Palacios, Gustavo
Published 2014

In vivo Ebola virus infection leads to a strong innate response in circulating immune cells

by Caballero, Ignacio S., Honko, Anna N., Gire, Stephen K., Winnicki, Sarah M., Melé, Marta, Gerhardinger, Chiara, Lin, Aaron E., Rinn, John L., Sabeti, Pardis C., Hensley, Lisa E., Connor, John H.
Published 2016

COIL: a methodology for evaluating malarial complexity of infection using likelihood from single nucleotide polymorphism data

by Galinsky, Kevin, Valim, Clarissa, Salmier, Arielle, de Thoisy, Benoit, Musset, Lise, Legrand, Eric, Faust, Aubrey, Baniecki, Mary Lynn, Ndiaye, Daouda, Daniels, Rachel F, Hartl, Daniel L, Sabeti, Pardis C, Wirth, Dyann F, Volkman, Sarah K, Neafsey, Daniel E
Published 2015

Evaluation of the Potential Impact of Ebola Virus Genomic Drift on the Efficacy of Sequence-Based Candidate Therapeutics

by Kugelman, Jeffrey R., Sanchez-Lockhart, Mariano, Andersen, Kristian G., Gire, Stephen, Park, Daniel J., Sealfon, Rachel, Lin, Aaron E., Wohl, Shirlee, Sabeti, Pardis C., Kuhn, Jens H., Palacios, Gustavo F.
Published 2015

Correction: Lassa hemorrhagic fever in a late term pregnancy from northern Sierra Leone with a positive maternal outcome: case report

by Branco, Luis M, Boisen, Matt L, Andersen, Kristian G, Grove, Jessica N, Moses, Lina M, Muncy, Ivana J, Henderson, Lee A, Schieffellin, John S, Robinson, James E, Bangura, James J, Grant, Donald S, Raabe, Vanessa N, Fonnie, balu M, Zaitsev, Eleina M, Sabeti, Pardis C, Garry, Robert F
Published 2011

Lassa hemorrhagic fever in a late term pregnancy from northern sierra leone with a positive maternal outcome: case report

by Branco, Luis M, Boisen, Matt L, Andersen, Kristian G, Grove, Jessica N, Moses, Lina M, Muncy, Ivana J, Henderson, Lee A, Schieffellin, John S, Robinson, James E, Bangura, James J, Grant, Donald S, Raabe, Vanessa N, Fonnie, Mbalu, Sabeti, Pardis C, Garry, Robert F
Published 2011

Human cerebral malaria and Plasmodium falciparum genotypes in Malawi

by Milner, Danny A, Vareta, Jimmy, Valim, Clarissa, Montgomery, Jacqui, Daniels, Rachel F, Volkman, Sarah K, Neafsey, Daniel E, Park, Daniel J, Schaffner, Stephen F, Mahesh, Nira C, Barnes, Kayla G, Rosen, David M, Lukens, Amanda K, Van-Tyne, Daria, Wiegand, Roger C, Sabeti, Pardis C, Seydel, Karl B, Glover, Simon J, Kamiza, Steve, Molyneux, Malcolm E, Taylor, Terrie E, Wirth, Dyann F
Published 2012

Genetic Surveillance Detects Both Clonal and Epidemic Transmission of Malaria following Enhanced Intervention in Senegal

by Daniels, Rachel, Chang, Hsiao-Han, Séne, Papa Diogoye, Park, Danny C., Neafsey, Daniel E., Schaffner, Stephen F., Hamilton, Elizabeth J., Lukens, Amanda K., Van Tyne, Daria, Mboup, Souleymane, Sabeti, Pardis C., Ndiaye, Daouda, Wirth, Dyann F., Hartl, Daniel L., Volkman, Sarah K.
Published 2013

Monitoring of Ebola Virus Makona Evolution through Establishment of Advanced Genomic Capability in Liberia

by Kugelman, Jeffrey R., Wiley, Michael R., Mate, Suzanne, Ladner, Jason T., Beitzel, Brett, Fakoli, Lawrence, Taweh, Fahn, Prieto, Karla, Diclaro, Joseph W., Minogue, Timothy, Schoepp, Randal J., Schaecher, Kurt E., Pettitt, James, Bateman, Stacey, Fair, Joseph, Kuhn, Jens H., Hensley, Lisa, Park, Daniel J., Sabeti, Pardis C., Sanchez-Lockhart, Mariano, Bolay, Fatorma K., Palacios, Gustavo
Published 2015

Development of a Single Nucleotide Polymorphism Barcode to Genotype Plasmodium vivax Infections

by Baniecki, Mary Lynn, Faust, Aubrey L., Schaffner, Stephen F., Park, Daniel J., Galinsky, Kevin, Daniels, Rachel F., Hamilton, Elizabeth, Ferreira, Marcelo U., Karunaweera, Nadira D., Serre, David, Zimmerman, Peter A., Sá, Juliana M., Wellems, Thomas E., Musset, Lise, Legrand, Eric, Melnikov, Alexandre, Neafsey, Daniel E., Volkman, Sarah K., Wirth, Dyann F., Sabeti, Pardis C.
Published 2015

Identification and Functional Validation of the Novel Antimalarial Resistance Locus PF10_0355 in Plasmodium falciparum

by Van Tyne, Daria, Park, Daniel J., Schaffner, Stephen F., Neafsey, Daniel E., Angelino, Elaine, Cortese, Joseph F., Barnes, Kayla G., Rosen, David M., Lukens, Amanda K., Daniels, Rachel F., Milner, Danny A., Johnson, Charles A., Shlyakhter, Ilya, Grossman, Sharon R., Becker, Justin S., Yamins, Daniel, Karlsson, Elinor K., Ndiaye, Daouda, Sarr, Ousmane, Mboup, Souleymane, Happi, Christian, Furlotte, Nicholas A., Eskin, Eleazar, Kang, Hyun Min, Hartl, Daniel L., Birren, Bruce W., Wiegand, Roger C., Lander, Eric S., Wirth, Dyann F., Volkman, Sarah K., Sabeti, Pardis C.
Published 2011