SAVoR: a server for sequencing annotation and visualization of RNA structures

by Li, Fan, Ryvkin, Paul, Childress, Daniel M., Valladares, Otto, Gregory, Brian D., Wang, Li-San
Published 2012

Mili and Miwi target RNA repertoire reveals piRNA biogenesis and function of Miwi in spermiogenesis

by Vourekas, Anastassios, Zheng, Qi, Alexiou, Panagiotis, Maragkakis, Manolis, Kirino, Yohei, Gregory, Brian D., Mourelatos, Zissimos
Published 2012

High-throughput identification of long-range regulatory elements and their target promoters in the human genome

by Hwang, Yih-Chii, Zheng, Qi, Gregory, Brian D., Wang, Li-San
Published 2013

CoRAL: predicting non-coding RNAs from small RNA-sequencing data

by Leung, Yuk Yee, Ryvkin, Paul, Ungar, Lyle H., Gregory, Brian D., Wang, Li-San
Published 2013

Analysis of the Host Transcriptome from Demyelinating Spinal Cord of Murine Coronavirus-Infected Mice

by Elliott, Ruth, Li, Fan, Dragomir, Isabelle, Chua, Ming Ming W., Gregory, Brian D., Weiss, Susan R.
Published 2013

Dicer-2 Processes Diverse Viral RNA Species

by Sabin, Leah R., Zheng, Qi, Thekkat, Pramod, Yang, Jamie, Hannon, Gregory J., Gregory, Brian D., Tudor, Matthew, Cherry, Sara
Published 2013

RNase-mediated protein footprint sequencing reveals protein-binding sites throughout the human transcriptome

by Silverman, Ian M, Li, Fan, Alexander, Anissa, Goff, Loyal, Trapnell, Cole, Rinn, John L, Gregory, Brian D
Published 2014

Terpene metabolic engineering via nuclear or chloroplast genomes profoundly and globally impacts off‐target pathways through metabolite signalling

by Pasoreck, Elise K., Su, Jin, Silverman, Ian M., Gosai, Sager J., Gregory, Brian D., Yuan, Joshua S., Daniell, Henry
Published 2016

A comprehensive database of high-throughput sequencing-based RNA secondary structure probing data (Structure Surfer)

by Berkowitz, Nathan D., Silverman, Ian M., Childress, Daniel M., Kazan, Hilal, Wang, Li-San, Gregory, Brian D.
Published 2016

Paternal Poly (ADP-ribose) Metabolism Modulates Retention of Inheritable Sperm Histones and Early Embryonic Gene Expression

by Ihara, Motomasa, Meyer-Ficca, Mirella L., Leu, N. Adrian, Rao, Shilpa, Li, Fan, Gregory, Brian D., Zalenskaya, Irina A., Schultz, Richard M., Meyer, Ralph G.
Published 2014

DASHR: database of small human noncoding RNAs

by Leung, Yuk Yee, Kuksa, Pavel P., Amlie-Wolf, Alexandre, Valladares, Otto, Ungar, Lyle H., Kannan, Sampath, Gregory, Brian D., Wang, Li-San
Published 2016

Essential Role for Endogenous siRNAs during Meiosis in Mouse Oocytes

by Stein, Paula, Rozhkov, Nikolay V., Li, Fan, Cárdenas, Fabián L., Davydenk, Olga, Vandivier, Lee E., Gregory, Brian D., Hannon, Gregory J., Schultz, Richard M.
Published 2015

Changes in the Transcriptome of Human Astrocytes Accompanying Oxidative Stress-Induced Senescence

by Crowe, Elizabeth P., Tuzer, Ferit, Gregory, Brian D., Donahue, Greg, Gosai, Sager J., Cohen, Justin, Leung, Yuk Y., Yetkin, Emre, Nativio, Raffaella, Wang, Li-San, Sell, Christian, Bonini, Nancy M., Berger, Shelley L., Johnson, F. Brad, Torres, Claudio
Published 2016

Transcriptomic Changes Due to Cytoplasmic TDP-43 Expression Reveal Dysregulation of Histone Transcripts and Nuclear Chromatin

by Amlie-Wolf, Alexandre, Ryvkin, Paul, Tong, Rui, Dragomir, Isabelle, Suh, EunRan, Xu, Yan, Van Deerlin, Vivianna M., Gregory, Brian D., Kwong, Linda K., Trojanowski, John Q., Lee, Virginia M.-Y., Wang, Li-San, Lee, Edward B.
Published 2015

Transformation of the intestinal epithelium by the MSI2 RNA binding protein

by Wang, Shan, Li, Ning, Yousefi, Maryam, Nakauka-Ddamba, Angela, Li, Fan, Parada, Kimberly, Rao, Shilpa, Minuesa, Gerard, Katz, Yarden, Gregory, Brian D., Kharas, Michael G., Yu, Zhengquan, Lengner, Christopher J.
Published 2015

Local admixture of amplified and diversified secreted pathogenesis determinants shapes mosaic Toxoplasma gondii genomes

by Lorenzi, Hernan, Khan, Asis, Behnke, Michael S., Namasivayam, Sivaranjani, Swapna, Lakshmipuram S., Hadjithomas, Michalis, Karamycheva, Svetlana, Pinney, Deborah, Brunk, Brian P., Ajioka, James W., Ajzenberg, Daniel, Boothroyd, John C., Boyle, Jon P., Dardé, Marie L., Diaz-Miranda, Maria A., Dubey, Jitender P., Fritz, Heather M., Gennari, Solange M., Gregory, Brian D., Kim, Kami, Saeij, Jeroen P. J., Su, Chunlei, White, Michael W., Zhu, Xing-Quan, Howe, Daniel K., Rosenthal, Benjamin M., Grigg, Michael E., Parkinson, John, Liu, Liang, Kissinger, Jessica C., Roos, David S., David Sibley, L
Published 2016