Toward accurate high-throughput SNP genotyping in the presence of inherited copy number variation

by MacConaill, Laura E, Aldred, Micheala A, Lu, Xincheng, LaFramboise, Thomas
Published 2007

Angiomyolipoma Have Common Mutations in TSC2 but No Other Common Genetic Events

by Qin, Wei, Bajaj, Vineeta, Malinowska, Izabela, Lu, Xin, MacConaill, Laura, Wu, Chin-Lee, Kwiatkowski, David J.
Published 2011

High Throughput Interrogation of Somatic Mutations in High Grade Serous Cancer of the Ovary

by Matulonis, Ursula A., Hirsch, Michelle, Palescandolo, Emanuele, Kim, Eejung, Liu, Joyce, van Hummelen, Paul, MacConaill, Laura, Drapkin, Ronny, Hahn, William C.
Published 2011

High-Throughput Genotyping in Metastatic Esophageal Squamous Cell Carcinoma Identifies Phosphoinositide-3-Kinase and BRAF Mutations

by Maeng, Chi Hoon, Lee, Jeeyun, van Hummelen, Paul, Park, Se Hoon, Palescandolo, Emanuele, Jang, Jiryeon, Park, Ha Young, Kang, So Young, MacConaill, Laura, Kim, Kyoung-Mee, Shim, Young-Mog
Published 2012

High-Throughput Mutation Profiling Identifies Frequent Somatic Mutations in Advanced Gastric Adenocarcinoma

by Lee, Jeeyun, van Hummelen, Paul, Go, Christina, Palescandolo, Emanuele, Jang, Jiryeon, Park, Ha Young, Kang, So Young, Park, Joon Oh, Kang, Won Ki, MacConaill, Laura, Kim, Kyoung-Mee
Published 2012

Analysis and Comparison of Somatic Mutations in Paired Primary and Recurrent Epithelial Ovarian Cancer Samples

by Kim, Yong-Man, Lee, Shin-Wha, Chun, Sung-Min, Kim, Dae-Yeon, Kim, Jong-Hyeok, Kim, Kyu-Rae, Kim, Young-Tak, Nam, Joo-Hyun, van Hummelen, Paul, MacConaill, Laura E., Hahn, William C., Jang, Se Jin
Published 2014

Genotyping Cancer-Associated Genes in Chordoma Identifies Mutations in Oncogenes and Areas of Chromosomal Loss Involving CDKN2A, PTEN, and SMARCB1

by Choy, Edwin, MacConaill, Laura E., Cote, Gregory M., Le, Long P., Shen, Jacson K., Nielsen, Gunnlaugur P., Iafrate, Anthony J., Garraway, Levi A., Hornicek, Francis J., Duan, Zhenfeng
Published 2014

Loss of E-cadherin disrupts ovarian epithelial inclusion cyst formation and collective cell movement in ovarian cancer cells

by Choi, Pui-Wah, Yang, Junzheng, Ng, Shu-Kay, Feltmate, Colleen, Muto, Michael G., Hasselblatt, Kathleen, Lafferty-Whyte, Kyle, JeBailey, Lellean, MacConaill, Laura, Welch, William R., Fong, Wing-Ping, Berkowitz, Ross S., Ng, Shu-Wing
Published 2015

BreaKmer: detection of structural variation in targeted massively parallel sequencing data using kmers

by Abo, Ryan P., Ducar, Matthew, Garcia, Elizabeth P., Thorner, Aaron R., Rojas-Rudilla, Vanesa, Lin, Ling, Sholl, Lynette M., Hahn, William C., Meyerson, Matthew, Lindeman, Neal I., Van Hummelen, Paul, MacConaill, Laura E.
Published 2015

Genomic sequencing of meningiomas identifies oncogenic SMO and AKT1 mutations

by Brastianos, Priscilla K., Horowitz, Peleg M., Santagata, Sandro, Jones, Robert T., McKenna, Aaron, Getz, Gad, Ligon, Keith L., Palescandolo, Emanuele, Van Hummelen, Paul, Ducar, Matthew D., Raza, Alina, Sunkavalli, Ashwini, MacConaill, Laura E., Stemmer-Rachamimov, Anat O., Louis, David N., Hahn, William C., Dunn, Ian F., Beroukhim, Rameen
Published 2013

Colorectal Cancers from Distinct Ancestral Populations Show Variations in BRAF Mutation Frequency

by Hanna, Megan C., Go, Christina, Roden, Christine, Jones, Robert T., Pochanard, Panisa, Javed, Ahmed Yasir, Javed, Awais, Mondal, Chandrani, Palescandolo, Emanuele, Van Hummelen, Paul, Hatton, Charles, Bass, Adam J., Chun, Sung Min, Na, Deuk Chae, Kim, Tae-Im, Jang, Se Jin, Osarogiagbon, Raymond U., Hahn, William C., Meyerson, Matthew, Garraway, Levi A., MacConaill, Laura E.
Published 2013

Massively parallel sequencing of formalin-fixed paraffin-embedded tissues

by Erlich, Rachel L, Palescandolo, Emanuele, Jones, Robert T, Sunkavalli, Ashwini, Raza, Alina, Ducar, Matthew, Hatton, Charles, Go, Christina, Roden, Christine, Hanna, Megan, Mills, Adri, Adusumilli, Ravali, Kumar, Prateek, Brastianos, Priscilla K, Meyerson, Matthew L, Hahn, William C, MacConaill, Laura E, Van Hummelen, Paul
Published 2012

The impact of tumor profiling approaches and genomic data strategies for cancer precision medicine

by Garofalo, Andrea, Sholl, Lynette, Reardon, Brendan, Taylor-Weiner, Amaro, Amin-Mansour, Ali, Miao, Diana, Liu, David, Oliver, Nelly, MacConaill, Laura, Ducar, Matthew, Rojas-Rudilla, Vanesa, Giannakis, Marios, Ghazani, Arezou, Gray, Stacy, Janne, Pasi, Garber, Judy, Joffe, Steve, Lindeman, Neal, Wagle, Nikhil, Garraway, Levi A., Van Allen, Eliezer M.
Published 2016

Whole-exome sequencing and clinical interpretation of FFPE tumor samples to guide precision cancer medicine

by Allen, Eliezer M. Van, Wagle, Nikhil, Stojanov, Petar, Perrin, Danielle L., Cibulskis, Kristian, Marlow, Sara, Jane-Valbuena, Judit, Friedrich, Dennis C., Kryukov, Gregory, Carter, Scott L., McKenna, Aaron, Sivachenko, Andrey, Rosenberg, Mara, Kiezun, Adam, Voet, Douglas, Lawrence, Michael, Lichtenstein, Lee T., Gentry, Jeff G., Huang, Franklin W., Fostel, Jennifer, Farlow, Deborah, Barbie, David, Gandhi, Leena, Lander, Eric S., Gray, Stacy W., Joffe, Steven, Janne, Pasi, Garber, Judy, MacConaill, Laura, Lindeman, Neal, Rollins, Barrett, Kantoff, Philip, Fisher, Sheila A., Gabriel, Stacey, Getz, Gad, Garraway, Levi A.
Published 2014

The Cancer Cell Line Encyclopedia enables predictive modeling of anticancer drug sensitivity

by Barretina, Jordi, Caponigro, Giordano, Stransky, Nicolas, Venkatesan, Kavitha, Margolin, Adam A., Kim, Sungjoon, Wilson, Christopher J., Lehár, Joseph, Kryukov, Gregory V., Sonkin, Dmitriy, Reddy, Anupama, Liu, Manway, Murray, Lauren, Berger, Michael F., Monahan, John E., Morais, Paula, Meltzer, Jodi, Korejwa, Adam, Jané-Valbuena, Judit, Mapa, Felipa A., Thibault, Joseph, Bric-Furlong, Eva, Raman, Pichai, Shipway, Aaron, Engels, Ingo H., Cheng, Jill, Yu, Guoying K., Yu, Jianjun, Aspesi, Peter, de Silva, Melanie, Jagtap, Kalpana, Jones, Michael D., Wang, Li, Hatton, Charles, Palescandolo, Emanuele, Gupta, Supriya, Mahan, Scott, Sougnez, Carrie, Onofrio, Robert C., Liefeld, Ted, MacConaill, Laura, Winckler, Wendy, Reich, Michael, Li, Nanxin, Mesirov, Jill P., Gabriel, Stacey B., Getz, Gad, Ardlie, Kristin, Chan, Vivien, Myer, Vic E., Weber, Barbara L., Porter, Jeff, Warmuth, Markus, Finan, Peter, Harris, Jennifer L., Meyerson, Matthew, Golub, Todd R., Morrissey, Michael P., Sellers, William R., Schlegel, Robert, Garraway, Levi A.
Published 2012