Maximizing biomarker discovery by minimizing gene signatures

by Chang, Chang, Wang, Junwei, Zhao, Chen, Fostel, Jennifer, Tong, Weida, Bushel, Pierre R, Deng, Youping, Pusztai, Lajos, Symmans, W Fraser, Shi, Tieliu
Published 2011

Targeted Deletion of Nrf2 Reduces Urethane-Induced Lung Tumor Development in Mice

by Bauer, Alison K., Cho, Hye-Youn, Miller-DeGraff, Laura, Walker, Christopher, Helms, Katherine, Fostel, Jennifer, Yamamoto, Masayuki, Kleeberger, Steven R.
Published 2011

Gel-free multiplexed reduced representation bisulfite sequencing for large-scale DNA methylation profiling

by Boyle, Patrick, Clement, Kendell, Gu, Hongcang, Smith, Zachary D, Ziller, Michael, Fostel, Jennifer L, Holmes, Laurie, Meldrim, Jim, Kelley, Fontina, Gnirke, Andreas, Meissner, Alexander
Published 2012

Mining the Archives: A Cross-Platform Analysis of Gene Expression Profiles in Archival Formalin-Fixed Paraffin-Embedded Tissues

by Webster, A. Francina, Zumbo, Paul, Fostel, Jennifer, Gandara, Jorge, Hester, Susan D., Recio, Leslie, Williams, Andrew, Wood, Charles E., Yauk, Carole L., Mason, Christopher E.
Published 2015

Standard reporting requirements for biological samples in metabolomics experiments: microbial and in vitro biology experiments

by van der Werf, Mariët J., Takors, Ralf, Smedsgaard, Jørn, Nielsen, Jens, Ferenci, Tom, Portais, Jean Charles, Wittmann, Christoph, Hooks, Mark, Tomassini, Alberta, Oldiges, Marco, Fostel, Jennifer, Sauer, Uwe
Published 2007

Discovery and characterization of artifactual mutations in deep coverage targeted capture sequencing data due to oxidative DNA damage during sample preparation

by Costello, Maura, Pugh, Trevor J., Fennell, Timothy J., Stewart, Chip, Lichtenstein, Lee, Meldrim, James C., Fostel, Jennifer L., Friedrich, Dennis C., Perrin, Danielle, Dionne, Danielle, Kim, Sharon, Gabriel, Stacey B., Lander, Eric S., Fisher, Sheila, Getz, Gad
Published 2013

CEBS—Chemical Effects in Biological Systems: a public data repository integrating study design and toxicity data with microarray and proteomics data

by Waters, Michael, Stasiewicz, Stanley, Alex Merrick, B., Tomer, Kenneth, Bushel, Pierre, Paules, Richard, Stegman, Nancy, Nehls, Gerald, Yost, Kenneth J., Johnson, C. Harris, Gustafson, Scott F., Xirasagar, Sandhya, Xiao, Nianqing, Huang, Cheng-Cheng, Boyer, Paul, Chan, Denny D., Pan, Qinyan, Gong, Hui, Taylor, John, Choi, Danielle, Rashid, Asif, Ahmed, Ayazaddin, Howle, Reese, Selkirk, James, Tennant, Raymond, Fostel, Jennifer
Published 2008

Profiling of the Tox21 10K compound library for agonists and antagonists of the estrogen receptor alpha signaling pathway

by Huang, Ruili, Sakamuru, Srilatha, Martin, Matt T., Reif, David M., Judson, Richard S., Houck, Keith A., Casey, Warren, Hsieh, Jui-Hua, Shockley, Keith R., Ceger, Patricia, Fostel, Jennifer, Witt, Kristine L., Tong, Weida, Rotroff, Daniel M., Zhao, Tongan, Shinn, Paul, Simeonov, Anton, Dix, David J., Austin, Christopher P., Kavlock, Robert J., Tice, Raymond R., Xia, Menghang
Published 2014

Whole-exome sequencing and clinical interpretation of FFPE tumor samples to guide precision cancer medicine

by Allen, Eliezer M. Van, Wagle, Nikhil, Stojanov, Petar, Perrin, Danielle L., Cibulskis, Kristian, Marlow, Sara, Jane-Valbuena, Judit, Friedrich, Dennis C., Kryukov, Gregory, Carter, Scott L., McKenna, Aaron, Sivachenko, Andrey, Rosenberg, Mara, Kiezun, Adam, Voet, Douglas, Lawrence, Michael, Lichtenstein, Lee T., Gentry, Jeff G., Huang, Franklin W., Fostel, Jennifer, Farlow, Deborah, Barbie, David, Gandhi, Leena, Lander, Eric S., Gray, Stacy W., Joffe, Steven, Janne, Pasi, Garber, Judy, MacConaill, Laura, Lindeman, Neal, Rollins, Barrett, Kantoff, Philip, Fisher, Sheila A., Gabriel, Stacey, Getz, Gad, Garraway, Levi A.
Published 2014

The Ontology for Biomedical Investigations

by Bandrowski, Anita, Brinkman, Ryan, Brochhausen, Mathias, Brush, Matthew H., Bug, Bill, Chibucos, Marcus C., Clancy, Kevin, Courtot, Mélanie, Derom, Dirk, Dumontier, Michel, Fan, Liju, Fostel, Jennifer, Fragoso, Gilberto, Gibson, Frank, Gonzalez-Beltran, Alejandra, Haendel, Melissa A., He, Yongqun, Heiskanen, Mervi, Hernandez-Boussard, Tina, Jensen, Mark, Lin, Yu, Lister, Allyson L., Lord, Phillip, Malone, James, Manduchi, Elisabetta, McGee, Monnie, Morrison, Norman, Overton, James A., Parkinson, Helen, Peters, Bjoern, Rocca-Serra, Philippe, Ruttenberg, Alan, Sansone, Susanna-Assunta, Scheuermann, Richard H., Schober, Daniel, Smith, Barry, Soldatova, Larisa N., Stoeckert, Christian J., Taylor, Chris F., Torniai, Carlo, Turner, Jessica A., Vita, Randi, Whetzel, Patricia L., Zheng, Jie
Published 2016