High-throughput microbial population genomics using the Cortex variation assembler

by Iqbal, Zamin, Turner, Isaac, McVean, Gil
Published 2013

De novo assembly and genotyping of variants using colored de Bruijn graphs

by Iqbal, Zamin, Caccamo, Mario, Turner, Isaac, Flicek, Paul, McVean, Gil
Published 2012

High-Accuracy HLA Type Inference from Whole-Genome Sequencing Data Using Population Reference Graphs

by Dilthey, Alexander T., Gourraud, Pierre-Antoine, Mentzer, Alexander J., Cereb, Nezih, Iqbal, Zamin, McVean, Gil
Published 2016

Improved genome inference in the MHC using a population reference graph

by Dilthey, Alexander, Cox, Charles, Iqbal, Zamin, Nelson, Matthew R., McVean, Gil
Published 2015

A Bayesian Approach to Inferring the Phylogenetic Structure of Communities from Metagenomic Data

by O’Brien, John D., Didelot, Xavier, Iqbal, Zamin, Amenga-Etego, Lucas, Ahiska, Bartu, Falush, Daniel
Published 2014

Inferring Strain Mixture within Clinical Plasmodium falciparum Isolates from Genomic Sequence Data

by O’Brien, John D., Iqbal, Zamin, Wendler, Jason, Amenga-Etego, Lucas
Published 2016

Identifying and Classifying Trait Linked Polymorphisms in Non-Reference Species by Walking Coloured de Bruijn Graphs

by Leggett, Richard M., Ramirez-Gonzalez, Ricardo H., Verweij, Walter, Kawashima, Cintia G., Iqbal, Zamin, Jones, Jonathan D. G., Caccamo, Mario, MacLean, Daniel
Published 2013

Rapid Whole-Genome Sequencing for Surveillance of Salmonella enterica Serovar Enteritidis

by den Bakker, Henk C., Allard, Marc W., Bopp, Dianna, Brown, Eric W., Fontana, John, Iqbal, Zamin, Kinney, Aristea, Limberger, Ronald, Musser, Kimberlee A., Shudt, Matthew, Strain, Errol, Wiedmann, Martin, Wolfgang, William J.
Published 2014

Binding of Plasmodium falciparum Merozoite Surface Proteins DBLMSP and DBLMSP2 to Human Immunoglobulin M Is Conserved among Broadly Diverged Sequence Variants*

by Crosnier, Cécile, Iqbal, Zamin, Knuepfer, Ellen, Maciuca, Sorina, Perrin, Abigail J., Kamuyu, Gathoni, Goulding, David, Bustamante, Leyla Y., Miles, Alistair, Moore, Shona C., Dougan, Gordon, Holder, Anthony A., Kwiatkowski, Dominic P., Rayner, Julian C., Pleass, Richard J., Wright, Gavin J.
Published 2016

Same-day diagnostic and surveillance data for tuberculosis via whole genome sequencing of direct respiratory samples

by Votintseva, Antonina A., Bradley, Phelim, Pankhurst, Louise, Elias, Carlos del Ojo, Loose, Matthew, Nilgiriwala, Kayzad, Chatterjee, Anirvan, Smith, E. Grace, Sanderson, Nicolas, Walker, Timothy M., Morgan, Marcus R., Wyllie, David H., Walker, A. Sarah, Peto, Tim E.A., Crook, Derrick W., Iqbal, Zamin
Published 2017

Corrigendum: Rapid antibiotic-resistance predictions from genome sequence data for Staphylococcus aureus and Mycobacterium tuberculosis

by Bradley, Phelim, Gordon, N. Claire, Walker, Timothy M., Dunn, Laura, Heys, Simon, Huang, Bill, Earle, Sarah, Pankhurst, Louise J., Anson, Luke, de Cesare, Mariateresa, Piazza, Paolo, Votintseva, Antonina A., Golubchik, Tanya, Wilson, Daniel J., Wyllie, David H., Diel, Roland, Niemann, Stefan, Feuerriegel, Silke, Kohl, Thomas A., Ismail, Nazir, Omar, Shaheed V., Smith, E. Grace, Buck, David, McVean, Gil, Walker, A. Sarah, Peto, Tim E. A., Crook, Derrick W., Iqbal, Zamin
Published 2016

Whole-genome sequencing for prediction of Mycobacterium tuberculosis drug susceptibility and resistance: a retrospective cohort study

by Walker, Timothy M, Kohl, Thomas A, Omar, Shaheed V, Hedge, Jessica, Del Ojo Elias, Carlos, Bradley, Phelim, Iqbal, Zamin, Feuerriegel, Silke, Niehaus, Katherine E, Wilson, Daniel J, Clifton, David A, Kapatai, Georgia, Ip, Camilla L C, Bowden, Rory, Drobniewski, Francis A, Allix-Béguec, Caroline, Gaudin, Cyril, Parkhill, Julian, Diel, Roland, Supply, Philip, Crook, Derrick W, Smith, E Grace, Walker, A Sarah, Ismail, Nazir, Niemann, Stefan, Peto, Tim E A
Published 2015

Rapid antibiotic-resistance predictions from genome sequence data for Staphylococcus aureus and Mycobacterium tuberculosis

by Bradley, Phelim, Gordon, N. Claire, Walker, Timothy M., Dunn, Laura, Heys, Simon, Huang, Bill, Earle, Sarah, Pankhurst, Louise J., Anson, Luke, de Cesare, Mariateresa, Piazza, Paolo, Votintseva, Antonina A., Golubchik, Tanya, Wilson, Daniel J., Wyllie, David H., Diel, Roland, Niemann, Stefan, Feuerriegel, Silke, Kohl, Thomas A., Ismail, Nazir, Omar, Shaheed V., Smith, E. Grace, Buck, David, McVean, Gil, Walker, A. Sarah, Peto, Tim E. A., Crook, Derrick W., Iqbal, Zamin
Published 2015

Mapping copy number variation by population scale genome sequencing

by Mills, Ryan E., Walter, Klaudia, Stewart, Chip, Handsaker, Robert E., Chen, Ken, Alkan, Can, Abyzov, Alexej, Yoon, Seungtai Chris, Ye, Kai, Cheetham, R. Keira, Chinwalla, Asif, Conrad, Donald F., Fu, Yutao, Grubert, Fabian, Hajirasouliha, Iman, Hormozdiari, Fereydoun, Iakoucheva, Lilia M., Iqbal, Zamin, Kang, Shuli, Kidd, Jeffrey M., Konkel, Miriam K., Korn, Joshua, Khurana, Ekta, Kura, Deniz, Lam, Hugo Y. K., Leng, Jing, Li, Ruiqiang, Li, Yingrui, Lin, Chang-Yun, Luo, Ruibang, Mu, Xinmeng Jasmine, Nemesh, James, Peckham, Heather E., Rausch, Tobias, Scally, Aylwyn, Shi, Xinghua, Stromberg, Michael P., Stütz, Adrian M., Urban, Alexander Eckehart, Walker, Jerilyn A., Wu, Jiantao, Zhang, Yujun, Zhang, Zhengdong D., Batzer, Mark A., Ding, Li, Marth, Gobor T., McVean, Gil, Sebat, Jonathan, Snyder, Michael, Wang, Jun, Ye, Kenny, Eichler, Evan E., Gerstein, Mark B., Hurles, Matthew E., Lee, Charles, McCarroll, Steven A., Korbel, Jan O.
Published 2011