Inference of the Properties of the Recombination Process from Whole Bacterial Genomes

by Ansari, M. Azim, Didelot, Xavier
Published 2014

Bayesian Inference of the Evolution of a Phenotype Distribution on a Phylogenetic Tree

by Ansari, M. Azim, Didelot, Xavier
Published 2016

ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes

by Didelot, Xavier, Wilson, Daniel J.
Published 2015

Epidemiological analysis of the Eyam plague outbreak of 1665–1666

by Whittles, Lilith K., Didelot, Xavier
Published 2016

Bayesian Inference of Infectious Disease Transmission from Whole-Genome Sequence Data

by Didelot, Xavier, Gardy, Jennifer, Colijn, Caroline
Published 2014

Formal Comment to Pettengill: The Time to Most Recent Common Ancestor Does Not (Usually) Approximate the Date of Divergence

by Achtman, Mark, Zhou, Zhemin, Didelot, Xavier
Published 2015

Impact of homologous and non-homologous recombination in the genomic evolution of Escherichia coli

by Didelot, Xavier, Méric, Guillaume, Falush, Daniel, Darling, Aaron E
Published 2012

SimBac: simulation of whole bacterial genomes with homologous recombination

by Brown, Thomas, Didelot, Xavier, Wilson, Daniel J., Maio, Nicola De
Published 2016

Interplay of recombination and selection in the genomes of Chlamydia trachomatis

by Joseph, Sandeep J, Didelot, Xavier, Gandhi, Khanjan, Dean, Deborah, Read, Timothy D
Published 2011

Mismatch induced speciation in Salmonella: model and data

by Falush, Daniel, Torpdahl, Mia, Didelot, Xavier, Conrad, Donald F, Wilson, Daniel J, Achtman, Mark
Published 2006

The nucleotide excision repair (NER) system of Helicobacter pylori: Role in mutation prevention and chromosomal import patterns after natural transformation

by Moccia, Claudia, Krebes, Juliane, Kulick, Stefan, Didelot, Xavier, Kraft, Christian, Bahlawane, Christelle, Suerbaum, Sebastian
Published 2012

Comparative Analysis of Chlamydia psittaci Genomes Reveals the Recent Emergence of a Pathogenic Lineage with a Broad Host Range

by Read, Timothy D., Joseph, Sandeep J., Didelot, Xavier, Liang, Brooke, Patel, Lisa, Dean, Deborah
Published 2013

Recombination Shapes Genome Architecture in an Organism from the Archaeal Domain

by Krause, David J., Didelot, Xavier, Cadillo-Quiroz, Hinsby, Whitaker, Rachel J.
Published 2014

Bayesian Reconstruction of Disease Outbreaks by Combining Epidemiologic and Genomic Data

by Jombart, Thibaut, Cori, Anne, Didelot, Xavier, Cauchemez, Simon, Fraser, Christophe, Ferguson, Neil
Published 2014

Efficient Inference of Recombination Hot Regions in Bacterial Genomes

by Yahara, Koji, Didelot, Xavier, Ansari, M. Azim, Sheppard, Samuel K., Falush, Daniel
Published 2014

The Complexity and Diversity of the Pathogenicity Locus in Clostridium difficile Clade 5

by Elliott, Briony, Dingle, Kate E., Didelot, Xavier, Crook, Derrick W., Riley, Thomas V.
Published 2014

Chlamydiaceae Genomics Reveals Interspecies Admixture and the Recent Evolution of Chlamydia abortus Infecting Lower Mammalian Species and Humans

by Joseph, Sandeep J., Marti, Hanna, Didelot, Xavier, Castillo-Ramirez, Santiago, Read, Timothy D., Dean, Deborah
Published 2015

Tetracycline Selective Pressure and Homologous Recombination Shape the Evolution of Chlamydia suis: A Recently Identified Zoonotic Pathogen

by Joseph, Sandeep J., Marti, Hanna, Didelot, Xavier, Read, Timothy D., Dean, Deborah
Published 2016

A Bayesian Approach to Inferring the Phylogenetic Structure of Communities from Metagenomic Data

by O’Brien, John D., Didelot, Xavier, Iqbal, Zamin, Amenga-Etego, Lucas, Ahiska, Bartu, Falush, Daniel
Published 2014

Comparisons of infant Escherichia coli isolates link genomic profiles with adaptation to the ecological niche

by de Muinck, Eric J, Lagesen, Karin, Afset, Jan Egil, Didelot, Xavier, Rønningen, Kjersti S, Rudi, Knut, Stenseth, Nils Chr, Trosvik, Pål
Published 2013