MetaPalette: a k-mer Painting Approach for Metagenomic Taxonomic Profiling and Quantification of Novel Strain Variation

by Koslicki, David, Falush, Daniel
Published 2016

Inference of population structure using multilocus genotype data: dominant markers and null alleles

by FALUSH, DANIEL, STEPHENS, MATTHEW, PRITCHARD, JONATHAN K
Published 2007

Inference of Population Structure using Dense Haplotype Data

by Lawson, Daniel John, Hellenthal, Garrett, Myers, Simon, Falush, Daniel
Published 2012

Impact of homologous and non-homologous recombination in the genomic evolution of Escherichia coli

by Didelot, Xavier, Méric, Guillaume, Falush, Daniel, Darling, Aaron E
Published 2012

Mismatch induced speciation in Salmonella: model and data

by Falush, Daniel, Torpdahl, Mia, Didelot, Xavier, Conrad, Donald F, Wilson, Daniel J, Achtman, Mark
Published 2006

Efficient Inference of Recombination Hot Regions in Bacterial Genomes

by Yahara, Koji, Didelot, Xavier, Ansari, M. Azim, Sheppard, Samuel K., Falush, Daniel
Published 2014

A Bayesian Approach to Inferring the Phylogenetic Structure of Communities from Metagenomic Data

by O’Brien, John D., Didelot, Xavier, Iqbal, Zamin, Amenga-Etego, Lucas, Ahiska, Bartu, Falush, Daniel
Published 2014

Hybrid Vibrio vulnificus

by Bisharat, Naiel, Cohen, Daniel I., Harding, Rosalind M., Falush, Daniel, Crook, Derrick W., Peto, Tim, Maiden, Martin C.
Published 2005

The Landscape of Realized Homologous Recombination in Pathogenic Bacteria

by Yahara, Koji, Didelot, Xavier, Jolley, Keith A., Kobayashi, Ichizo, Maiden, Martin C.J., Sheppard, Samuel K., Falush, Daniel
Published 2016

Recombination and Population Structure in Salmonella enterica

by Didelot, Xavier, Bowden, Rory, Street, Teresa, Golubchik, Tanya, Spencer, Chris, McVean, Gil, Sangal, Vartul, Anjum, Muna F., Achtman, Mark, Falush, Daniel, Donnelly, Peter
Published 2011

Sex and virulence in Escherichia coli: an evolutionary perspective

by Wirth, Thierry, Falush, Daniel, Lan, Ruiting, Colles, Frances, Mensa, Patience, Wieler, Lothar H, Karch, Helge, Reeves, Peter R, Maiden, Martin CJ, Ochman, Howard, Achtman, Mark
Published 2006

Host-associated Genetic Import in Campylobacter jejuni

by McCarthy, Noel D., Colles, Frances M., Dingle, Kate E., Bagnall, Mary C., Manning, Georgina, Maiden, Martin C.J., Falush, Daniel
Published 2007

Recent Acquisition of Helicobacter pylori by Baka Pygmies

by Nell, Sandra, Eibach, Daniel, Montano, Valeria, Maady, Ayas, Nkwescheu, Armand, Siri, Jose, Elamin, Wael F., Falush, Daniel, Linz, Bodo, Achtman, Mark, Moodley, Yoshan, Suerbaum, Sebastian
Published 2013

Roary: rapid large-scale prokaryote pan genome analysis

by Page, Andrew J., Cummins, Carla A., Hunt, Martin, Wong, Vanessa K., Reuter, Sandra, Holden, Matthew T.G., Fookes, Maria, Falush, Daniel, Keane, Jacqueline A., Parkhill, Julian
Published 2015

Progressive genomic convergence of two Helicobacter pylori strains during mixed infection of a patient with chronic gastritis

by Cao, Qizhi, Didelot, Xavier, Wu, Zhongbiao, Li, Zongwei, He, Lihua, Li, Yunsheng, Ni, Ming, You, Yuanhai, Lin, Xi, Li, Zhen, Gong, Yanan, Zheng, Minqiao, Zhang, Minli, Liu, Jie, Wang, Weijun, Bo, Xiaochen, Falush, Daniel, Wang, Shengqi, Zhang, Jianzhong
Published 2015

Progressive genome-wide introgression in agricultural Campylobacter coli

by Sheppard, Samuel K, Didelot, Xavier, Jolley, Keith A, Darling, Aaron E, Pascoe, Ben, Meric, Guillaume, Kelly, David J, Cody, Alison, Colles, Frances M, Strachan, Norval J C, Ogden, Iain D, Forbes, Ken, French, Nigel P, Carter, Philip, Miller, William G, McCarthy, Noel D, Owen, Robert, Litrup, Eva, Egholm, Michael, Affourtit, Jason P, Bentley, Stephen D, Parkhill, Julian, Maiden, Martin C J, Falush, Daniel
Published 2013