vHOG, a multispecies vertebrate ontology of homologous organs groups

by Niknejad, Anne, Comte, Aurélie, Parmentier, Gilles, Roux, Julien, Bastian, Frederic B., Robinson-Rechavi, Marc
Published 2012

Uncovering hidden duplicated content in public transcriptomics data

by Rosikiewicz, Marta, Comte, Aurélie, Niknejad, Anne, Robinson-Rechavi, Marc, Bastian, Frederic B.
Published 2013

An Extended, Boolean Model of the Septation Initiation Network in S.Pombe Provides Insights into Its Regulation

by Chasapi, Anastasia, Wachowicz, Paulina, Niknejad, Anne, Collin, Philippe, Krapp, Andrea, Cano, Elena, Simanis, Viesturs, Xenarios, Ioannis
Published 2015

Boolean regulatory network reconstruction using literature based knowledge with a genetic algorithm optimization method

by Dorier, Julien, Crespo, Isaac, Niknejad, Anne, Liechti, Robin, Ebeling, Martin, Xenarios, Ioannis
Published 2016

The SwissLipids knowledgebase for lipid biology

by Aimo, Lucila, Liechti, Robin, Hyka-Nouspikel, Nevila, Niknejad, Anne, Gleizes, Anne, Götz, Lou, Kuznetsov, Dmitry, David, Fabrice P.A., van der Goot, F. Gisou, Riezman, Howard, Bougueleret, Lydie, Xenarios, Ioannis, Bridge, Alan
Published 2015

The Confidence Information Ontology: a step towards a standard for asserting confidence in annotations

by Bastian, Frederic B., Chibucos, Marcus C., Gaudet, Pascale, Giglio, Michelle, Holliday, Gemma L., Huang, Hong, Lewis, Suzanna E., Niknejad, Anne, Orchard, Sandra, Poux, Sylvain, Skunca, Nives, Robinson-Rechavi, Marc
Published 2015

Updates in Rhea—a manually curated resource of biochemical reactions

by Morgat, Anne, Axelsen, Kristian B., Lombardot, Thierry, Alcántara, Rafael, Aimo, Lucila, Zerara, Mohamed, Niknejad, Anne, Belda, Eugeni, Hyka-Nouspikel, Nevila, Coudert, Elisabeth, Redaschi, Nicole, Bougueleret, Lydie, Steinbeck, Christoph, Xenarios, Ioannis, Bridge, Alan
Published 2015

Identification of a RAI1-associated disease network through integration of exome sequencing, transcriptomics, and 3D genomics

by Loviglio, Maria Nicla, Beck, Christine R., White, Janson J., Leleu, Marion, Harel, Tamar, Guex, Nicolas, Niknejad, Anne, Bi, Weimin, Chen, Edward S., Crespo, Isaac, Yan, Jiong, Charng, Wu-Lin, Gu, Shen, Fang, Ping, Coban-Akdemir, Zeynep, Shaw, Chad A., Jhangiani, Shalini N., Muzny, Donna M., Gibbs, Richard A., Rougemont, Jacques, Xenarios, Ioannis, Lupski, James R., Reymond, Alexandre
Published 2016

Unification of multi-species vertebrate anatomy ontologies for comparative biology in Uberon

by Haendel, Melissa A, Balhoff, James P, Bastian, Frederic B, Blackburn, David C, Blake, Judith A, Bradford, Yvonne, Comte, Aurelie, Dahdul, Wasila M, Dececchi, Thomas A, Druzinsky, Robert E, Hayamizu, Terry F, Ibrahim, Nizar, Lewis, Suzanna E, Mabee, Paula M, Niknejad, Anne, Robinson-Rechavi, Marc, Sereno, Paul C, Mungall, Christopher J
Published 2014