Introduction to Computational Proteomics

by Colinge, Jacques, Bennett, Keiryn L
Published 2007

abFASP-MS: Affinity-Based Filter-Aided Sample Preparation Mass Spectrometry for Quantitative Analysis of Chemically Labeled Protein Complexes

by Huber, Marie L., Sacco, Roberto, Parapatics, Katja, Skucha, Anna, Khamina, Kseniya, Müller, André C., Rudashevskaya, Elena L., Bennett, Keiryn L.
Published 2014

Affinity Purification Strategies for Proteomic Analysis of Transcription Factor Complexes

by Giambruno, Roberto, Grebien, Florian, Stukalov, Alexey, Knoll, Christian, Planyavsky, Melanie, Rudashevskaya, Elena L., Colinge, Jacques, Superti-Furga, Giulio, Bennett, Keiryn L.
Published 2013

An Inducible Retroviral Expression System for Tandem Affinity Purification Mass-Spectrometry-Based Proteomics Identifies Mixed Lineage Kinase Domain-like Protein (MLKL) as an Heat...

by Bigenzahn, Johannes W., Fauster, Astrid, Rebsamen, Manuele, Kandasamy, Richard K., Scorzoni, Stefania, Vladimer, Gregory I., Müller, André C., Gstaiger, Matthias, Zuber, Johannes, Bennett, Keiryn L., Superti-Furga, Giulio
Published 2016

Proteome-wide small molecule and metabolite interaction mapping

by Huber, Kilian V. M., Olek, Karin M., Müller, André C., Soon Heng Tan, Chris, Bennett, Keiryn L., Colinge, Jacques, Superti-Furga, Giulio
Published 2015

A Pilot Proteogenomic Study with Data Integration Identifies MCT1 and GLUT1 as Prognostic Markers in Lung Adenocarcinoma

by Stewart, Paul A., Parapatics, Katja, Welsh, Eric A., Müller, André C., Cao, Haoyun, Fang, Bin, Koomen, John M., Eschrich, Steven A., Bennett, Keiryn L., Haura, Eric B.
Published 2015

Internalization of Pseudomonas aeruginosa Strain PAO1 into Epithelial Cells Is Promoted by Interaction of a T6SS Effector with the Microtubule Network

by Sana, Thibault G., Baumann, Christoph, Merdes, Andreas, Soscia, Chantal, Rattei, Thomas, Hachani, Abderrahman, Jones, Cerith, Bennett, Keiryn L., Filloux, Alain, Superti-Furga, Giulio, Voulhoux, Romé, Bleves, Sophie
Published 2015

The lysine methyltransferase SMYD3 interacts with hepatitis C virus NS5A and is a negative regulator of viral particle production

by Eberle, Carol-Ann, Zayas, Margarita, Stukalov, Alexey, Pichlmair, Andreas, Alvisi, Gualtiero, Müller, André C., Bennett, Keiryn L., Bartenschlager, Ralf, Superti-Furga, Giulio
Published 2014

Identifying Kinase Substrates via a Heavy ATP Kinase Assay and Quantitative Mass Spectrometry

by Müller, André C., Giambruno, Roberto, Weißer, Juliane, Májek, Peter, Hofer, Alexandre, Bigenzahn, Johannes W., Superti-Furga, Giulio, Jessen, Henning J., Bennett, Keiryn L.
Published 2016

Functional Dissection of the TBK1 Molecular Network

by Goncalves, Adriana, Bürckstümmer, Tilmann, Dixit, Evelyn, Scheicher, Ruth, Górna, Maria W., Karayel, Evren, Sugar, Cristina, Stukalov, Alexey, Berg, Tiina, Kralovics, Robert, Planyavsky, Melanie, Bennett, Keiryn L., Colinge, Jacques, Superti-Furga, Giulio
Published 2011

A Target-Disease Network Model of Second-Generation BCR-ABL Inhibitor Action in Ph+ ALL

by Rix, Uwe, Colinge, Jacques, Blatt, Katharina, Gridling, Manuela, Remsing Rix, Lily L., Parapatics, Katja, Cerny-Reiterer, Sabine, Burkard, Thomas R., Jäger, Ulrich, Melo, Junia V., Bennett, Keiryn L., Valent, Peter, Superti-Furga, Giulio
Published 2013

Experimental characterization of the human non-sequence-specific nucleic acid interactome

by Dürnberger, Gerhard, Bürckstümmer, Tilmann, Huber, Kilian, Giambruno, Roberto, Doerks, Tobias, Karayel, Evren, Burkard, Thomas R, Kaupe, Ines, Müller, André C, Schönegger, Andreas, Ecker, Gerhard F, Lohninger, Hans, Bork, Peer, Bennett, Keiryn L, Superti-Furga, Giulio, Colinge, Jacques
Published 2013

The Lipid-Modifying Enzyme SMPDL3B Negatively Regulates Innate Immunity

by Heinz, Leonhard X., Baumann, Christoph L., Köberlin, Marielle S., Snijder, Berend, Gawish, Riem, Shui, Guanghou, Sharif, Omar, Aspalter, Irene M., Müller, André C., Kandasamy, Richard K., Breitwieser, Florian P., Pichlmair, Andreas, Bruckner, Manuela, Rebsamen, Manuele, Blüml, Stephan, Karonitsch, Thomas, Fauster, Astrid, Colinge, Jacques, Bennett, Keiryn L., Knapp, Sylvia, Wenk, Markus R., Superti-Furga, Giulio
Published 2015

SLC38A9 is a component of the lysosomal amino acid-sensing machinery that controls mTORC1

by Rebsamen, Manuele, Pochini, Lorena, Stasyk, Taras, de Araújo, Mariana E. G., Galluccio, Michele, Kandasamy, Richard K., Snijder, Berend, Fauster, Astrid, Rudashevskaya, Elena L., Bruckner, Manuela, Scorzoni, Stefania, Filipek, Przemyslaw A., Huber, Kilian V. M., Bigenzahn, Johannes, Heinz, Leonhard X., Kraft, Claudine, Bennett, Keiryn L., Indiveri, Cesare, Huber, Lukas A., Superti-Furga, Giulio
Published 2015

Stereospecific targeting of MTH1 by (S)-crizotinib as anticancer strategy

by Huber, Kilian V. M., Salah, Eidarus, Radic, Branka, Gridling, Manuela, Elkins, Jonathan M., Stukalov, Alexey, Jemth, Ann-Sofie, Gokturk, Camilla, Sanjiv, Kumar, Strömberg, Kia, Pham, Therese, Berglund, Ulrika Warpman, Colinge, Jacques, Bennett, Keiryn L., Loizou, Joanna, Helleday, Thomas, Knapp, Stefan, Superti-Furga, Giulio
Published 2014

Targeting a cell state common to triple-negative breast cancers

by Muellner, Markus K, Mair, Barbara, Ibrahim, Yasir, Kerzendorfer, Claudia, Lechtermann, Hannelore, Trefzer, Claudia, Klepsch, Freya, Müller, André C, Leitner, Ernestine, Macho-Maschler, Sabine, Superti-Furga, Giulio, Bennett, Keiryn L, Baselga, José, Rix, Uwe, Kubicek, Stefan, Colinge, Jacques, Serra, Violeta, Nijman, Sebastian MB
Published 2015

CD4+ T cell lineage integrity is controlled by the histone deacetylases HDAC1 and HDAC2

by Boucheron, Nicole, Tschismarov, Roland, Goeschl, Lisa, Moser, Mirjam A., Lagger, Sabine, Sakaguchi, Shinya, Winter, Mircea, Lenz, Florian, Vitko, Dijana, Breitwieser, Florian P., Müller, Lena, Hassan, Hammad, Bennett, Keiryn L., Colinge, Jacques, Schreiner, Wolfgang, Egawa, Takeshi, Taniuchi, Ichiro, Matthias, Patrick, Seiser, Christian, Ellmeier, Wilfried
Published 2014

Pharmacological targeting of the Wdr5-MLL interaction in C/EBPα N-terminal leukemia

by Grebien, Florian, Vedadi, Masoud, Getlik, Matthäus, Giambruno, Roberto, Grover, Amit, Avellino, Roberto, Skucha, Anna, Vittori, Sarah, Kuznetsova, Ekaterina, Smil, David, Barsyte-Lovejoy, Dalia, Li, Fengling, Poda, Gennadiy, Schapira, Matthieu, Wu, Hong, Dong, Aiping, Senisterra, Guillermo, Stukalov, Alexey, Huber, Kilian V. M., Schönegger, Andreas, Marcellus, Richard, Bilban, Martin, Bock, Christoph, Brown, Peter J., Zuber, Johannes, Bennett, Keiryn L., Al-awar, Rima, Delwel, Ruud, Nerlov, Claus, Arrowsmith, Cheryl H., Superti-Furga, Giulio
Published 2015

The CRAPome: a Contaminant Repository for Affinity Purification Mass Spectrometry Data

by Mellacheruvu, Dattatreya, Wright, Zachary, Couzens, Amber L., Lambert, Jean-Philippe, St-Denis, Nicole, Li, Tuo, Miteva, Yana V., Hauri, Simon, Sardiu, Mihaela E., Low, Teck Yew, Halim, Vincentius A., Bagshaw, Richard D., Hubner, Nina C., al-Hakim, Abdallah, Bouchard, Annie, Faubert, Denis, Fermin, Damian, Dunham, Wade H., Goudreault, Marilyn, Lin, Zhen-Yuan, Badillo, Beatriz Gonzalez, Pawson, Tony, Durocher, Daniel, Coulombe, Benoit, Aebersold, Ruedi, Superti-Furga, Giulio, Colinge, Jacques, Heck, Albert J. R., Choi, Hyungwon, Gstaiger, Matthias, Mohammed, Shabaz, Cristea, Ileana M., Bennett, Keiryn L., Washburn, Mike P., Raught, Brian, Ewing, Rob M., Gingras, Anne-Claude, Nesvizhskii, Alexey I.
Published 2013