Fast scaffolding with small independent mixed integer programs

by Salmela, Leena, Mäkinen, Veli, Välimäki, Niko, Ylinen, Johannes, Ukkonen, Esko
Published 2011

Exploration and retrieval of whole-metagenome sequencing samples

by Seth, Sohan, Välimäki, Niko, Kaski, Samuel, Honkela, Antti
Published 2014

Frequent L1 retrotranspositions originating from TTC28 in colorectal cancer

by Pitkänen, Esa, Cajuso, Tatiana, Katainen, Riku, Kaasinen, Eevi, Välimäki, Niko, Palin, Kimmo, Taipale, Jussi, Aaltonen, Lauri A., Kilpivaara, Outi
Published 2014

Sequence element enrichment analysis to determine the genetic basis of bacterial phenotypes

by Lees, John A., Vehkala, Minna, Välimäki, Niko, Harris, Simon R., Chewapreecha, Claire, Croucher, Nicholas J., Marttinen, Pekka, Davies, Mark R., Steer, Andrew C., Tong, Steven Y. C., Honkela, Antti, Parkhill, Julian, Bentley, Stephen D., Corander, Jukka
Published 2016

Combined Analysis of Variation in Core, Accessory and Regulatory Genome Regions Provides a Super-Resolution View into the Evolution of Bacterial Populations

by McNally, Alan, Oren, Yaara, Kelly, Darren, Pascoe, Ben, Dunn, Steven, Sreecharan, Tristan, Vehkala, Minna, Välimäki, Niko, Prentice, Michael B., Ashour, Amgad, Avram, Oren, Pupko, Tal, Dobrindt, Ulrich, Literak, Ivan, Guenther, Sebastian, Schaufler, Katharina, Wieler, Lothar H., Zhiyong, Zong, Sheppard, Samuel K., McInerney, James O., Corander, Jukka
Published 2016

Erratum: Genomic signatures of human and animal disease in the zoonotic pathogen Streptococcus suis

by Weinert, Lucy A., Chaudhuri, Roy R., Wang, Jinhong, Peters, Sarah E., Corander, Jukka, Jombart, Thibaut, Baig, Abiyad, Howell, Kate J., Vehkala, Minna, Välimäki, Niko, Harris, David, Chieu, Tran Thi Bich, Van Vinh Chau, Nguyen, Campbell, James, Schultsz, Constance, Parkhill, Julian, Bentley, Stephen D., Langford, Paul R., Rycroft, Andrew N., Wren, Brendan W., Farrar, Jeremy, Baker, Stephen, Thi Hoa, Ngo, Holden, Matthew T.G., Tucker, Alexander W., Maskell, Duncan J.
Published 2015

Genomic signatures of human and animal disease in the zoonotic pathogen Streptococcus suis

by Weinert, Lucy A., Chaudhuri, Roy R., Wang, Jinhong, Peters, Sarah E., Corander, Jukka, Jombart, Thibaut, Baig, Abiyad, Howell, Kate J., Vehkala, Minna, Välimäki, Niko, Harris, David, Chieu, Tran Thi Bich, Van Vinh Chau, Nguyen, Campbell, James, Schultsz, Constance, Parkhill, Julian, Bentley, Stephen D., Langford, Paul R., Rycroft, Andrew N., Wren, Brendan W., Farrar, Jeremy, Baker, Stephen, Hoa, Ngo Thi, Holden, Matthew T.G., Tucker, Alexander W., Maskell, Duncan J.
Published 2015

The Glanville fritillary genome retains an ancient karyotype and reveals selective chromosomal fusions in Lepidoptera

by Ahola, Virpi, Lehtonen, Rainer, Somervuo, Panu, Salmela, Leena, Koskinen, Patrik, Rastas, Pasi, Välimäki, Niko, Paulin, Lars, Kvist, Jouni, Wahlberg, Niklas, Tanskanen, Jaakko, Hornett, Emily A., Ferguson, Laura C., Luo, Shiqi, Cao, Zijuan, de Jong, Maaike A., Duplouy, Anne, Smolander, Olli-Pekka, Vogel, Heiko, McCoy, Rajiv C., Qian, Kui, Chong, Wong Swee, Zhang, Qin, Ahmad, Freed, Haukka, Jani K., Joshi, Aruj, Salojärvi, Jarkko, Wheat, Christopher W., Grosse-Wilde, Ewald, Hughes, Daniel, Katainen, Riku, Pitkänen, Esa, Ylinen, Johannes, Waterhouse, Robert M., Turunen, Mikko, Vähärautio, Anna, Ojanen, Sami P., Schulman, Alan H., Taipale, Minna, Lawson, Daniel, Ukkonen, Esko, Mäkinen, Veli, Goldsmith, Marian R., Holm, Liisa, Auvinen, Petri, Frilander, Mikko J., Hanski, Ilkka
Published 2014