MexY-Promoted Aminoglycoside Resistance in Pseudomonas aeruginosa: Involvement of a Putative Proximal Binding Pocket in Aminoglycoside Recognition

by Lau, Calvin Ho-Fung, Hughes, Daniel, Poole, Keith
Published 2014

Analysis of high-molecular-weight fructan polymers in crude plant extracts by high-resolution LC-MS

by Harrison, Scott, Fraser, Karl, Lane, Geoff, Hughes, Daniel, Villas-Boas, Silas, Rasmussen, Susanne
Published 2011

Comparing determinants of physical activity in Puerto Rican, Mexican-American, and non-Hispanic white breast cancer survivors

by Hughes, Daniel C, Tirado-Gomez, Maribel, Vallejo, Liliana, Gonzalez, Velda, Treviño-Whitaker, Rose A, Villanueva, Gabriela, Basen-Engquist, Karen
Published 2015

MuSE: accounting for tumor heterogeneity using a sample-specific error model improves sensitivity and specificity in mutation calling from sequencing data

by Fan, Yu, Xi, Liu, Hughes, Daniel S. T., Zhang, Jianjun, Zhang, Jianhua, Futreal, P. Andrew, Wheeler, David A., Wang, Wenyi
Published 2016

Effects of six months of Yoga on inflammatory serum markers prognostic of recurrence risk in breast cancer survivors

by Long Parma, Dorothy, Hughes, Daniel C, Ghosh, Sagar, Li, Rong, Treviño-Whitaker, Rose A, Ogden, Susan M, Ramirez, Amelie G
Published 2015

Rescuing Perishable Neuroanatomical Information from a Threatened Biodiversity Hotspot: Remote Field Methods for Brain Tissue Preservation Validated by Cytoarchitectonic Analysis,...

by Hughes, Daniel F., Walker, Ellen M., Gignac, Paul M., Martinez, Anais, Negishi, Kenichiro, Lieb, Carl S., Greenbaum, Eli, Khan, Arshad M.
Published 2016

VectorBase: improvements to a bioinformatics resource for invertebrate vector genomics

by Megy, Karine, Emrich, Scott J., Lawson, Daniel, Campbell, David, Dialynas, Emmanuel, Hughes, Daniel S.T., Koscielny, Gautier, Louis, Christos, MacCallum, Robert M., Redmond, Seth N., Sheehan, Andrew, Topalis, Pantelis, Wilson, Derek
Published 2012

Daughters and Mothers Against Breast Cancer (DAMES): Main outcomes of a randomized controlled trial of weight loss in overweight mothers with breast cancer and their overweight dau...

by Demark-Wahnefried, Wendy, Jones, Lee W, Snyder, Denise C, Sloane, Richard J, Kimmick, Gretchen G, Hughes, Daniel C, Badr, Hoda J, Miller, Paige E, Burke, Lora E, Lipkus, Isaac M
Published 2014

Ensembl Genomes: an integrative resource for genome-scale data from non-vertebrate species

by Kersey, Paul J., Staines, Daniel M., Lawson, Daniel, Kulesha, Eugene, Derwent, Paul, Humphrey, Jay C., Hughes, Daniel S. T., Keenan, Stephan, Kerhornou, Arnaud, Koscielny, Gautier, Langridge, Nicholas, McDowall, Mark D., Megy, Karine, Maheswari, Uma, Nuhn, Michael, Paulini, Michael, Pedro, Helder, Toneva, Iliana, Wilson, Derek, Yates, Andrew, Birney, Ewan
Published 2012

Ensembl Genomes 2013: scaling up access to genome-wide data

by Kersey, Paul Julian, Allen, James E., Christensen, Mikkel, Davis, Paul, Falin, Lee J., Grabmueller, Christoph, Hughes, Daniel Seth Toney, Humphrey, Jay, Kerhornou, Arnaud, Khobova, Julia, Langridge, Nicholas, McDowall, Mark D., Maheswari, Uma, Maslen, Gareth, Nuhn, Michael, Ong, Chuang Kee, Paulini, Michael, Pedro, Helder, Toneva, Iliana, Tuli, Mary Ann, Walts, Brandon, Williams, Gareth, Wilson, Derek, Youens-Clark, Ken, Monaco, Marcela K., Stein, Joshua, Wei, Xuehong, Ware, Doreen, Bolser, Daniel M., Howe, Kevin Lee, Kulesha, Eugene, Lawson, Daniel, Staines, Daniel Michael
Published 2014

Lucilia cuprina genome unlocks parasitic fly biology to underpin future interventions

by Anstead, Clare A., Korhonen, Pasi K., Young, Neil D., Hall, Ross S., Jex, Aaron R., Murali, Shwetha C., Hughes, Daniel S.T., Lee, Siu F., Perry, Trent, Stroehlein, Andreas J., Ansell, Brendan R.E., Breugelmans, Bert, Hofmann, Andreas, Qu, Jiaxin, Dugan, Shannon, Lee, Sandra L., Chao, Hsu, Dinh, Huyen, Han, Yi, Doddapaneni, Harsha V., Worley, Kim C., Muzny, Donna M., Ioannidis, Panagiotis, Waterhouse, Robert M., Zdobnov, Evgeny M., James, Peter J., Bagnall, Neil H., Kotze, Andrew C., Gibbs, Richard A., Richards, Stephen, Batterham, Philip, Gasser, Robin B.
Published 2015

The Glanville fritillary genome retains an ancient karyotype and reveals selective chromosomal fusions in Lepidoptera

by Ahola, Virpi, Lehtonen, Rainer, Somervuo, Panu, Salmela, Leena, Koskinen, Patrik, Rastas, Pasi, Välimäki, Niko, Paulin, Lars, Kvist, Jouni, Wahlberg, Niklas, Tanskanen, Jaakko, Hornett, Emily A., Ferguson, Laura C., Luo, Shiqi, Cao, Zijuan, de Jong, Maaike A., Duplouy, Anne, Smolander, Olli-Pekka, Vogel, Heiko, McCoy, Rajiv C., Qian, Kui, Chong, Wong Swee, Zhang, Qin, Ahmad, Freed, Haukka, Jani K., Joshi, Aruj, Salojärvi, Jarkko, Wheat, Christopher W., Grosse-Wilde, Ewald, Hughes, Daniel, Katainen, Riku, Pitkänen, Esa, Ylinen, Johannes, Waterhouse, Robert M., Turunen, Mikko, Vähärautio, Anna, Ojanen, Sami P., Schulman, Alan H., Taipale, Minna, Lawson, Daniel, Ukkonen, Esko, Mäkinen, Veli, Goldsmith, Marian R., Holm, Liisa, Auvinen, Petri, Frilander, Mikko J., Hanski, Ilkka
Published 2014

The whole genome sequence of the Mediterranean fruit fly, Ceratitis capitata (Wiedemann), reveals insights into the biology and adaptive evolution of a highly invasive pest species

by Papanicolaou, Alexie, Schetelig, Marc F., Arensburger, Peter, Atkinson, Peter W., Benoit, Joshua B., Bourtzis, Kostas, Castañera, Pedro, Cavanaugh, John P., Chao, Hsu, Childers, Christopher, Curril, Ingrid, Dinh, Huyen, Doddapaneni, HarshaVardhan, Dolan, Amanda, Dugan, Shannon, Friedrich, Markus, Gasperi, Giuliano, Geib, Scott, Georgakilas, Georgios, Gibbs, Richard A., Giers, Sarah D., Gomulski, Ludvik M., González-Guzmán, Miguel, Guillem-Amat, Ana, Han, Yi, Hatzigeorgiou, Artemis G., Hernández-Crespo, Pedro, Hughes, Daniel S. T., Jones, Jeffery W., Karagkouni, Dimitra, Koskinioti, Panagiota, Lee, Sandra L., Malacrida, Anna R., Manni, Mosè, Mathiopoulos, Kostas, Meccariello, Angela, Murali, Shwetha C., Murphy, Terence D., Muzny, Donna M., Oberhofer, Georg, Ortego, Félix, Paraskevopoulou, Maria D., Poelchau, Monica, Qu, Jiaxin, Reczko, Martin, Robertson, Hugh M., Rosendale, Andrew J., Rosselot, Andrew E., Saccone, Giuseppe, Salvemini, Marco, Savini, Grazia, Schreiner, Patrick, Scolari, Francesca, Siciliano, Paolo, Sim, Sheina B., Tsiamis, George, Ureña, Enric, Vlachos, Ioannis S., Werren, John H., Wimmer, Ernst A., Worley, Kim C., Zacharopoulou, Antigone, Richards, Stephen, Handler, Alfred M.
Published 2016

Butterfly genome reveals promiscuous exchange of mimicry adaptations among species

by Dasmahapatra, Kanchon K, Walters, James R., Briscoe, Adriana D., Davey, John W., Whibley, Annabel, Nadeau, Nicola J., Zimin, Aleksey V., Hughes, Daniel S. T., Ferguson, Laura C., Martin, Simon H., Salazar, Camilo, Lewis, James J., Adler, Sebastian, Ahn, Seung-Joon, Baker, Dean A., Baxter, Simon W., Chamberlain, Nicola L., Chauhan, Ritika, Counterman, Brian A., Dalmay, Tamas, Gilbert, Lawrence E., Gordon, Karl, Heckel, David G., Hines, Heather M., Hoff, Katharina J., Holland, Peter W.H., Jacquin-Joly, Emmanuelle, Jiggins, Francis M., Jones, Robert T., Kapan, Durrell D., Kersey, Paul, Lamas, Gerardo, Lawson, Daniel, Mapleson, Daniel, Maroja, Luana S., Martin, Arnaud, Moxon, Simon, Palmer, William J., Papa, Riccardo, Papanicolaou, Alexie, Pauchet, Yannick, Ray, David A., Rosser, Neil, Salzberg, Steven L., Supple, Megan A., Surridge, Alison, Tenger-Trolander, Ayse, Vogel, Heiko, Wilkinson, Paul A., Wilson, Derek, Yorke, James A., Yuan, Furong, Balmuth, Alexi L., Eland, Cathlene, Gharbi, Karim, Thomson, Marian, Gibbs, Richard A., Han, Yi, Jayaseelan, Joy C., Kovar, Christie, Mathew, Tittu, Muzny, Donna M., Ongeri, Fiona, Pu, Ling-Ling, Qu, Jiaxin, Thornton, Rebecca L., Worley, Kim C., Wu, Yuan-Qing, Linares, Mauricio, Blaxter, Mark L., Constant, Richard H. ffrench, Joron, Mathieu, Kronforst, Marcus R., Mullen, Sean P., Reed, Robert D., Scherer, Steven E., Richards, Stephen, Mallet, James, McMillan, W. Owen, Jiggins, Chris D.
Published 2012

Genome of the Asian longhorned beetle (Anoplophora glabripennis), a globally significant invasive species, reveals key functional and evolutionary innovations at the beetle–plant i...

by McKenna, Duane D., Scully, Erin D., Pauchet, Yannick, Hoover, Kelli, Kirsch, Roy, Geib, Scott M., Mitchell, Robert F., Waterhouse, Robert M., Ahn, Seung-Joon, Arsala, Deanna, Benoit, Joshua B., Blackmon, Heath, Bledsoe, Tiffany, Bowsher, Julia H., Busch, André, Calla, Bernarda, Chao, Hsu, Childers, Anna K., Childers, Christopher, Clarke, Dave J., Cohen, Lorna, Demuth, Jeffery P., Dinh, Huyen, Doddapaneni, HarshaVardhan, Dolan, Amanda, Duan, Jian J., Dugan, Shannon, Friedrich, Markus, Glastad, Karl M., Goodisman, Michael A. D., Haddad, Stephanie, Han, Yi, Hughes, Daniel S. T., Ioannidis, Panagiotis, Johnston, J. Spencer, Jones, Jeffery W., Kuhn, Leslie A., Lance, David R., Lee, Chien-Yueh, Lee, Sandra L., Lin, Han, Lynch, Jeremy A., Moczek, Armin P., Murali, Shwetha C., Muzny, Donna M., Nelson, David R., Palli, Subba R., Panfilio, Kristen A., Pers, Dan, Poelchau, Monica F., Quan, Honghu, Qu, Jiaxin, Ray, Ann M., Rinehart, Joseph P., Robertson, Hugh M., Roehrdanz, Richard, Rosendale, Andrew J., Shin, Seunggwan, Silva, Christian, Torson, Alex S., Jentzsch, Iris M. Vargas, Werren, John H., Worley, Kim C., Yocum, George, Zdobnov, Evgeny M., Gibbs, Richard A., Richards, Stephen
Published 2016

Unique features of a global human ectoparasite identified through sequencing of the bed bug genome

by Benoit, Joshua B., Adelman, Zach N., Reinhardt, Klaus, Dolan, Amanda, Poelchau, Monica, Jennings, Emily C., Szuter, Elise M., Hagan, Richard W., Gujar, Hemant, Shukla, Jayendra Nath, Zhu, Fang, Mohan, M., Nelson, David R., Rosendale, Andrew J., Derst, Christian, Resnik, Valentina, Wernig, Sebastian, Menegazzi, Pamela, Wegener, Christian, Peschel, Nicolai, Hendershot, Jacob M., Blenau, Wolfgang, Predel, Reinhard, Johnston, Paul R., Ioannidis, Panagiotis, Waterhouse, Robert M., Nauen, Ralf, Schorn, Corinna, Ott, Mark-Christoph, Maiwald, Frank, Johnston, J. Spencer, Gondhalekar, Ameya D., Scharf, Michael E., Peterson, Brittany F., Raje, Kapil R., Hottel, Benjamin A., Armisén, David, Crumière, Antonin Jean Johan, Refki, Peter Nagui, Santos, Maria Emilia, Sghaier, Essia, Viala, Sèverine, Khila, Abderrahman, Ahn, Seung-Joon, Childers, Christopher, Lee, Chien-Yueh, Lin, Han, Hughes, Daniel S. T., Duncan, Elizabeth J., Murali, Shwetha C., Qu, Jiaxin, Dugan, Shannon, Lee, Sandra L., Chao, Hsu, Dinh, Huyen, Han, Yi, Doddapaneni, Harshavardhan, Worley, Kim C., Muzny, Donna M., Wheeler, David, Panfilio, Kristen A., Vargas Jentzsch, Iris M., Vargo, Edward L., Booth, Warren, Friedrich, Markus, Weirauch, Matthew T., Anderson, Michelle A. E., Jones, Jeffery W., Mittapalli, Omprakash, Zhao, Chaoyang, Zhou, Jing-Jiang, Evans, Jay D., Attardo, Geoffrey M., Robertson, Hugh M., Zdobnov, Evgeny M., Ribeiro, Jose M. C., Gibbs, Richard A., Werren, John H., Palli, Subba R., Schal, Coby, Richards, Stephen
Published 2016

The First Myriapod Genome Sequence Reveals Conservative Arthropod Gene Content and Genome Organisation in the Centipede Strigamia maritima

by Chipman, Ariel D., Ferrier, David E. K., Brena, Carlo, Qu, Jiaxin, Hughes, Daniel S. T., Schröder, Reinhard, Torres-Oliva, Montserrat, Znassi, Nadia, Jiang, Huaiyang, Almeida, Francisca C., Alonso, Claudio R., Apostolou, Zivkos, Aqrawi, Peshtewani, Arthur, Wallace, Barna, Jennifer C. J., Blankenburg, Kerstin P., Brites, Daniela, Capella-Gutiérrez, Salvador, Coyle, Marcus, Dearden, Peter K., Du Pasquier, Louis, Duncan, Elizabeth J., Ebert, Dieter, Eibner, Cornelius, Erikson, Galina, Evans, Peter D., Extavour, Cassandra G., Francisco, Liezl, Gabaldón, Toni, Gillis, William J., Goodwin-Horn, Elizabeth A., Green, Jack E., Griffiths-Jones, Sam, Grimmelikhuijzen, Cornelis J. P., Gubbala, Sai, Guigó, Roderic, Han, Yi, Hauser, Frank, Havlak, Paul, Hayden, Luke, Helbing, Sophie, Holder, Michael, Hui, Jerome H. L., Hunn, Julia P., Hunnekuhl, Vera S., Jackson, LaRonda, Javaid, Mehwish, Jhangiani, Shalini N., Jiggins, Francis M., Jones, Tamsin E., Kaiser, Tobias S., Kalra, Divya, Kenny, Nathan J., Korchina, Viktoriya, Kovar, Christie L., Kraus, F. Bernhard, Lapraz, François, Lee, Sandra L., Lv, Jie, Mandapat, Christigale, Manning, Gerard, Mariotti, Marco, Mata, Robert, Mathew, Tittu, Neumann, Tobias, Newsham, Irene, Ngo, Dinh N., Ninova, Maria, Okwuonu, Geoffrey, Ongeri, Fiona, Palmer, William J., Patil, Shobha, Patraquim, Pedro, Pham, Christopher, Pu, Ling-Ling, Putman, Nicholas H., Rabouille, Catherine, Ramos, Olivia Mendivil, Rhodes, Adelaide C., Robertson, Helen E., Robertson, Hugh M., Ronshaugen, Matthew, Rozas, Julio, Saada, Nehad, Sánchez-Gracia, Alejandro, Scherer, Steven E., Schurko, Andrew M., Siggens, Kenneth W., Simmons, DeNard, Stief, Anna, Stolle, Eckart, Telford, Maximilian J., Tessmar-Raible, Kristin, Thornton, Rebecca, van der Zee, Maurijn, von Haeseler, Arndt, Williams, James M., Willis, Judith H., Wu, Yuanqing, Zou, Xiaoyan, Lawson, Daniel, Muzny, Donna M., Worley, Kim C., Gibbs, Richard A., Akam, Michael, Richards, Stephen
Published 2014