Genomic perspectives on the evolution and spread of bacterial pathogens

by Bentley, Stephen D., Parkhill, Julian
Published 2015

Bioinformatic identification of novel regulatory DNA sequence motifs in Streptomyces coelicolor

by Studholme, David J, Bentley, Stephen D, Kormanec, Jan
Published 2004

Re-annotation and re-analysis of the Campylobacter jejuni NCTC11168 genome sequence

by Gundogdu, Ozan, Bentley, Stephen D, Holden, Matt T, Parkhill, Julian, Dorrell, Nick, Wren, Brendan W
Published 2007

A High-Resolution View of Genome-Wide Pneumococcal Transformation

by Croucher, Nicholas J., Harris, Simon R., Barquist, Lars, Parkhill, Julian, Bentley, Stephen D.
Published 2012

Investigations into genome diversity of Haemophilus influenzae using whole genome sequencing of clinical isolates and laboratory transformants

by Power, Peter M, Bentley, Stephen D, Parkhill, Julian, Moxon, E Richard, Hood, Derek W
Published 2012

Horizontal DNA Transfer Mechanisms of Bacteria as Weapons of Intragenomic Conflict

by Croucher, Nicholas J., Mostowy, Rafal, Wymant, Christopher, Turner, Paul, Bentley, Stephen D., Fraser, Christophe
Published 2016

Two-phase importance sampling for inference about transmission trees

by Numminen, Elina, Chewapreecha, Claire, Sirén, Jukka, Turner, Claudia, Turner, Paul, Bentley, Stephen D., Corander, Jukka
Published 2014

The Impact of Recombination on dN/dS within Recently Emerged Bacterial Clones

by Castillo-Ramírez, Santiago, Harris, Simon R., Holden, Matthew T. G., He, Miao, Parkhill, Julian, Bentley, Stephen D., Feil, Edward J.
Published 2011

Detection of recombination events in bacterial genomes from large population samples

by Marttinen, Pekka, Hanage, William P., Croucher, Nicholas J., Connor, Thomas R., Harris, Simon R., Bentley, Stephen D., Corander, Jukka
Published 2012

Independent evolution of the core and accessory gene sets in the genus Neisseria: insights gained from the genome of Neisseria lactamica isolate 020-06

by Bennett, Julia S, Bentley, Stephen D, Vernikos, Georgios S, Quail, Michael A, Cherevach, Inna, White, Brian, Parkhill, Julian, Maiden, Martin CJ
Published 2010

Genome sequence of Staphylococcus lugdunensis N920143 allows identification of putative colonization and virulence factors

by Heilbronner, Simon, Holden, Matthew TG, van Tonder, Andries, Geoghegan, Joan A, Foster, Timothy J, Parkhill, Julian, Bentley, Stephen D
Published 2011

Evidence of antimicrobial resistance-conferring genetic elements among pneumococci isolated prior to 1974

by Wyres, Kelly L, van Tonder, Andries, Lambertsen, Lotte M, Hakenbeck, Regine, Parkhill, Julian, Bentley, Stephen D, Brueggemann, Angela B
Published 2013

Piliation of Invasive Streptococcus pneumoniae Isolates in the Era before Pneumococcal Conjugate Vaccine Introduction in Malawi

by Kulohoma, Benard W., Gray, Katherine, Kamng'ona, Arox, Cornick, Jennifer, Bentley, Stephen D., Heyderman, Robert S., Everett, Dean B.
Published 2013

A genomic approach to bacterial taxonomy: an examination and proposed reclassification of species within the genus Neisseria

by Bennett, Julia S., Jolley, Keith A., Earle, Sarah G., Corton, Craig, Bentley, Stephen D., Parkhill, Julian, Maiden, Martin C. J.
Published 2012

Climate induces seasonality in pneumococcal transmission

by Numminen, Elina, Chewapreecha, Claire, Turner, Claudia, Goldblatt, David, Nosten, Francois, Bentley, Stephen D., Turner, Paul, Corander, Jukka
Published 2015

Corrigendum: Climate induces seasonality in pneumococcal transmission

by Numminen, Elina, Chewapreecha, Claire, Turner, Claudia, Goldblatt, David, Nosten, Francois, Bentley, Stephen D., Turner, Paul, Corander, Jukka
Published 2016

Population genomic datasets describing the post-vaccine evolutionary epidemiology of Streptococcus pneumoniae

by Croucher, Nicholas J., Finkelstein, Jonathan A., Pelton, Stephen I., Parkhill, Julian, Bentley, Stephen D., Lipsitch, Marc, Hanage, William P.
Published 2015

Diversification of bacterial genome content through distinct mechanisms over different timescales

by Croucher, Nicholas J., Coupland, Paul G., Stevenson, Abbie E., Callendrello, Alanna, Bentley, Stephen D., Hanage, William P.
Published 2014

Genetic Characterisation of Malawian Pneumococci Prior to the Roll-Out of the PCV13 Vaccine Using a High-Throughput Whole Genome Sequencing Approach

by Everett, Dean B., Cornick, Jennifer, Denis, Brigitte, Chewapreecha, Claire, Croucher, Nicholas, Harris, Simon, Parkhill, Julian, Gordon, Stephen, Carrol, Enitan D., French, Neil, Heyderman, Robert S., Bentley, Stephen D.
Published 2012

Population genomics of post-vaccine changes in pneumococcal epidemiology

by Croucher, Nicholas J., Finkelstein, Jonathan A., Pelton, Stephen I., Mitchell, Patrick K., Lee, Grace M., Parkhill, Julian, Bentley, Stephen D., Hanage, William P., Lipsitch, Marc
Published 2013