Genome Sequence of Fusarium oxysporum f. sp. melonis Strain NRRL 26406, a Fungus Causing Wilt Disease on Melon

by Ma, Li-Jun, Shea, Terrance, Young, Sarah, Zeng, Qiandong, Kistler, H. Corby
Published 2014

Genome Sequence of Spizellomyces punctatus

by Russ, Carsten, Lang, B. Franz, Chen, Zehua, Gujja, Sharvari, Shea, Terrance, Zeng, Qiandong, Young, Sarah, Cuomo, Christina A., Nusbaum, Chad
Published 2016

Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement

by Walker, Bruce J., Abeel, Thomas, Shea, Terrance, Priest, Margaret, Abouelliel, Amr, Sakthikumar, Sharadha, Cuomo, Christina A., Zeng, Qiandong, Wortman, Jennifer, Young, Sarah K., Earl, Ashlee M.
Published 2014

Whole Genome Sequencing of Mycobacterium africanum Strains from Mali Provides Insights into the Mechanisms of Geographic Restriction

by Winglee, Kathryn, Manson McGuire, Abigail, Maiga, Mamoudou, Abeel, Thomas, Shea, Terrance, Desjardins, Christopher A., Diarra, Bassirou, Baya, Bocar, Sanogo, Moumine, Diallo, Souleymane, Earl, Ashlee M., Bishai, William R.
Published 2016

Comparative genomics and prediction of conditionally dispensable sequences in legume–infecting Fusarium oxysporum formae speciales facilitates identification of candidate effectors...

by Williams, Angela H., Sharma, Mamta, Thatcher, Louise F., Azam, Sarwar, Hane, James K., Sperschneider, Jana, Kidd, Brendan N., Anderson, Jonathan P., Ghosh, Raju, Garg, Gagan, Lichtenzveig, Judith, Kistler, H. Corby, Shea, Terrance, Young, Sarah, Buck, Sally-Anne G., Kamphuis, Lars G., Saxena, Rachit, Pande, Suresh, Ma, Li-Jun, Varshney, Rajeev K., Singh, Karam B.
Published 2016

Genomic and functional analyses of Mycobacterium tuberculosis strains implicate ald in D-cycloserine resistance

by Desjardins, Christopher A., Cohen, Keira A., Munsamy, Vanisha, Abeel, Thomas, Maharaj, Kashmeel, Walker, Bruce J., Shea, Terrance P., Almeida, Deepak V., Manson, Abigail L., Salazar, Alex, Padayatchi, Nesri, O’Donnell, Max R., Mlisana, Koleka P., Wortman, Jennifer, Birren, Bruce W., Grosset, Jacques, Earl, Ashlee M., Pym, Alexander S.
Published 2016

Comparative Genome Analysis of Trichophyton rubrum and Related Dermatophytes Reveals Candidate Genes Involved in Infection

by Martinez, Diego A., Oliver, Brian G., Gräser, Yvonne, Goldberg, Jonathan M., Li, Wenjun, Martinez-Rossi, Nilce M., Monod, Michel, Shelest, Ekaterina, Barton, Richard C., Birch, Elizabeth, Brakhage, Axel A., Chen, Zehua, Gurr, Sarah J., Heiman, David, Heitman, Joseph, Kosti, Idit, Rossi, Antonio, Saif, Sakina, Samalova, Marketa, Saunders, Charles W., Shea, Terrance, Summerbell, Richard C., Xu, Jun, Young, Sarah, Zeng, Qiandong, Birren, Bruce W., Cuomo, Christina A., White, Theodore C.
Published 2012

An Improved Canine Genome and a Comprehensive Catalogue of Coding Genes and Non-Coding Transcripts

by Hoeppner, Marc P., Lundquist, Andrew, Pirun, Mono, Meadows, Jennifer R. S., Zamani, Neda, Johnson, Jeremy, Sundström, Görel, Cook, April, FitzGerald, Michael G., Swofford, Ross, Mauceli, Evan, Moghadam, Behrooz Torabi, Greka, Anna, Alföldi, Jessica, Abouelleil, Amr, Aftuck, Lynne, Bessette, Daniel, Berlin, Aaron, Brown, Adam, Gearin, Gary, Lui, Annie, Macdonald, J. Pendexter, Priest, Margaret, Shea, Terrance, Turner-Maier, Jason, Zimmer, Andrew, Lander, Eric S., di Palma, Federica, Lindblad-Toh, Kerstin, Grabherr, Manfred G.
Published 2014

Structure of the germline genome of Tetrahymena thermophila and relationship to the massively rearranged somatic genome

by Hamilton, Eileen P, Kapusta, Aurélie, Huvos, Piroska E, Bidwell, Shelby L, Zafar, Nikhat, Tang, Haibao, Hadjithomas, Michalis, Krishnakumar, Vivek, Badger, Jonathan H, Caler, Elisabet V, Russ, Carsten, Zeng, Qiandong, Fan, Lin, Levin, Joshua Z, Shea, Terrance, Young, Sarah K, Hegarty, Ryan, Daza, Riza, Gujja, Sharvari, Wortman, Jennifer R, Birren, Bruce W, Nusbaum, Chad, Thomas, Jainy, Carey, Clayton M, Pritham, Ellen J, Feschotte, Cédric, Noto, Tomoko, Mochizuki, Kazufumi, Papazyan, Romeo, Taverna, Sean D, Dear, Paul H, Cassidy-Hanley, Donna M, Xiong, Jie, Miao, Wei, Orias, Eduardo, Coyne, Robert S
Published 2016

Evolution of Extensively Drug-Resistant Tuberculosis over Four Decades: Whole Genome Sequencing and Dating Analysis of Mycobacterium tuberculosis Isolates from KwaZulu-Natal

by Cohen, Keira A., Abeel, Thomas, Manson McGuire, Abigail, Desjardins, Christopher A., Munsamy, Vanisha, Shea, Terrance P., Walker, Bruce J., Bantubani, Nonkqubela, Almeida, Deepak V., Alvarado, Lucia, Chapman, Sinéad B., Mvelase, Nomonde R., Duffy, Eamon Y., Fitzgerald, Michael G., Govender, Pamla, Gujja, Sharvari, Hamilton, Susanna, Howarth, Clinton, Larimer, Jeffrey D., Maharaj, Kashmeel, Pearson, Matthew D., Priest, Margaret E., Zeng, Qiandong, Padayatchi, Nesri, Grosset, Jacques, Young, Sarah K., Wortman, Jennifer, Mlisana, Koleka P., O'Donnell, Max R., Birren, Bruce W., Bishai, William R., Pym, Alexander S., Earl, Ashlee M.
Published 2015

Whole Genome Deep Sequencing of HIV-1 Reveals the Impact of Early Minor Variants Upon Immune Recognition During Acute Infection

by Henn, Matthew R., Boutwell, Christian L., Charlebois, Patrick, Lennon, Niall J., Power, Karen A., Macalalad, Alexander R., Berlin, Aaron M., Malboeuf, Christine M., Ryan, Elizabeth M., Gnerre, Sante, Zody, Michael C., Erlich, Rachel L., Green, Lisa M., Berical, Andrew, Wang, Yaoyu, Casali, Monica, Streeck, Hendrik, Bloom, Allyson K., Dudek, Tim, Tully, Damien, Newman, Ruchi, Axten, Karen L., Gladden, Adrianne D., Battis, Laura, Kemper, Michael, Zeng, Qiandong, Shea, Terrance P., Gujja, Sharvari, Zedlack, Carmen, Gasser, Olivier, Brander, Christian, Hess, Christoph, Günthard, Huldrych F., Brumme, Zabrina L., Brumme, Chanson J., Bazner, Suzane, Rychert, Jenna, Tinsley, Jake P., Mayer, Ken H., Rosenberg, Eric, Pereyra, Florencia, Levin, Joshua Z., Young, Sarah K., Jessen, Heiko, Altfeld, Marcus, Birren, Bruce W., Walker, Bruce D., Allen, Todd M.
Published 2012