OcculterCut: A Comprehensive Survey of AT-Rich Regions in Fungal Genomes

by Testa, Alison C., Oliver, Richard P., Hane, James K.
Published 2016

Resequencing and Comparative Genomics of Stagonospora nodorum: Sectional Gene Absence and Effector Discovery

by Syme, Robert Andrew, Hane, James K., Friesen, Timothy L., Oliver, Richard P.
Published 2013

Genome Sequencing and Comparative Genomics of the Broad Host-Range Pathogen Rhizoctonia solani AG8

by Hane, James K., Anderson, Jonathan P., Williams, Angela H., Sperschneider, Jana, Singh, Karam B.
Published 2014

Reactive Oxygen Species Play a Role in the Infection of the Necrotrophic Fungi, Rhizoctonia solani in Wheat

by Foley, Rhonda C., Kidd, Brendan N., Hane, James K., Anderson, Jonathan P., Singh, Karam B.
Published 2016

Evaluation of Secretion Prediction Highlights Differing Approaches Needed for Oomycete and Fungal Effectors

by Sperschneider, Jana, Williams, Angela H., Hane, James K., Singh, Karam B., Taylor, Jennifer M.
Published 2015

The Arabidopsis KH-Domain RNA-Binding Protein ESR1 Functions in Components of Jasmonate Signalling, Unlinking Growth Restraint and Resistance to Stress

by Thatcher, Louise F., Kamphuis, Lars G., Hane, James K., Oñate-Sánchez, Luis, Singh, Karam B.
Published 2015

CodingQuarry: highly accurate hidden Markov model gene prediction in fungal genomes using RNA-seq transcripts

by Testa, Alison C, Hane, James K, Ellwood, Simon R, Oliver, Richard P
Published 2015

A novel mode of chromosomal evolution peculiar to filamentous Ascomycete fungi

by Hane, James K, Rouxel, Thierry, Howlett, Barbara J, Kema, Gert HJ, Goodwin, Stephen B, Oliver, Richard P
Published 2011

Development of genomic resources for the narrow-leafed lupin (Lupinus angustifolius): construction of a bacterial artificial chromosome (BAC) library and BAC-end sequencing

by Gao, Ling-Ling, Hane, James K, Kamphuis, Lars G, Foley , Rhonda, Shi, Bu-Jun, Atkins, Craig A, Singh, Karam B
Published 2011

A comparative hidden Markov model analysis pipeline identifies proteins characteristic of cereal-infecting fungi

by Sperschneider, Jana, Gardiner, Donald M, Taylor, Jennifer M, Hane, James K, Singh, Karam B, Manners, John M
Published 2013

Analysis of conglutin seed storage proteins across lupin species using transcriptomic, protein and comparative genomic approaches

by Foley, Rhonda C, Jimenez-Lopez, Jose C, Kamphuis, Lars G, Hane, James K, Melser, Su, Singh, Karam B
Published 2015

Utilizing Gene Tree Variation to Identify Candidate Effector Genes in Zymoseptoria tritici

by McDonald, Megan C., McGinness, Lachlan, Hane, James K., Williams, Angela H., Milgate, Andrew, Solomon, Peter S.
Published 2016

Transcriptome sequencing of different narrow-leafed lupin tissue types provides a comprehensive uni-gene assembly and extensive gene-based molecular markers

by Kamphuis, Lars G, Hane, James K, Nelson, Matthew N, Gao, Lingling, Atkins, Craig A, Singh, Karam B
Published 2015

The genome sequence of the biocontrol fungus Metarhizium anisopliae and comparative genomics of Metarhizium species

by Pattemore, Julie A, Hane, James K, Williams, Angela H, Wilson, Bree AL, Stodart, Ben J, Ash, Gavin J
Published 2014

A first genome assembly of the barley fungal pathogen Pyrenophora teres f. teres

by Ellwood, Simon R, Liu, Zhaohui, Syme, Rob A, Lai, Zhibing, Hane, James K, Keiper, Felicity, Moffat, Caroline S, Oliver, Richard P, Friesen, Timothy L
Published 2010

Mass-spectrometry data for Rhizoctonia solani proteins produced during infection of wheat and vegetative growth

by Anderson, Jonathan P., Hane, James K., Stoll, Thomas, Pain, Nicholas, Hastie, Marcus L., Kaur, Parwinder, Hoogland, Christine, Gorman, Jeffrey J., Singh, Karam B.
Published 2016

Proteomic Analysis of Rhizoctonia solani Identifies Infection-specific, Redox Associated Proteins and Insight into Adaptation to Different Plant Hosts*

by Anderson, Jonathan P., Hane, James K., Stoll, Thomas, Pain, Nicholas, Hastie, Marcus L., Kaur, Parwinder, Hoogland, Christine, Gorman, Jeffrey J., Singh, Karam B.
Published 2016

Comprehensive Annotation of the Parastagonospora nodorum Reference Genome Using Next-Generation Genomics, Transcriptomics and Proteogenomics

by Syme, Robert A., Tan, Kar-Chun, Hane, James K., Dodhia, Kejal, Stoll, Thomas, Hastie, Marcus, Furuki, Eiko, Ellwood, Simon R., Williams, Angela H., Tan, Yew-Foon, Testa, Alison C., Gorman, Jeffrey J., Oliver, Richard P.
Published 2016

Comparative genomics and prediction of conditionally dispensable sequences in legume–infecting Fusarium oxysporum formae speciales facilitates identification of candidate effectors...

by Williams, Angela H., Sharma, Mamta, Thatcher, Louise F., Azam, Sarwar, Hane, James K., Sperschneider, Jana, Kidd, Brendan N., Anderson, Jonathan P., Ghosh, Raju, Garg, Gagan, Lichtenzveig, Judith, Kistler, H. Corby, Shea, Terrance, Young, Sarah, Buck, Sally-Anne G., Kamphuis, Lars G., Saxena, Rachit, Pande, Suresh, Ma, Li-Jun, Varshney, Rajeev K., Singh, Karam B.
Published 2016

Comparative Genomics of a Plant-Pathogenic Fungus, Pyrenophora tritici-repentis, Reveals Transduplication and the Impact of Repeat Elements on Pathogenicity and Population Divergen...

by Manning, Viola A., Pandelova, Iovanna, Dhillon, Braham, Wilhelm, Larry J., Goodwin, Stephen B., Berlin, Aaron M., Figueroa, Melania, Freitag, Michael, Hane, James K., Henrissat, Bernard, Holman, Wade H., Kodira, Chinnappa D., Martin, Joel, Oliver, Richard P., Robbertse, Barbara, Schackwitz, Wendy, Schwartz, David C., Spatafora, Joseph W., Turgeon, B. Gillian, Yandava, Chandri, Young, Sarah, Zhou, Shiguo, Zeng, Qiandong, Grigoriev, Igor V., Ma, Li-Jun, Ciuffetti, Lynda M.
Published 2013