The Impact of Recombination on dN/dS within Recently Emerged Bacterial Clones

by Castillo-Ramírez, Santiago, Harris, Simon R., Holden, Matthew T. G., He, Miao, Parkhill, Julian, Bentley, Stephen D., Feil, Edward J.
Published 2011

Turner et al. Reply to “Emergence of the Same Successful Clade among Distinct Populations of emm89 Streptococcus pyogenes in Multiple Geographic Regions”

by Turner, Claire E., Lamagni, Theresa, Holden, Matthew T. G., David, Sophia, Jones, Michael D., Game, Laurence, Efstratiou, Androulla, Sriskandan, Shiranee
Published 2015

A novel streptococcal integrative conjugative element involved in iron acquisition

by Heather, Zoe, Holden, Matthew T G, Steward, Karen F, Parkhill, Julian, Song, Lijiang, Challis, Gregory L, Robinson, Carl, Davis-Poynter, Nicholas, Waller, Andrew S
Published 2008

Molecular Analysis of an Outbreak of Lethal Postpartum Sepsis Caused by Streptococcus pyogenes

by Turner, Claire E., Dryden, Matthew, Holden, Matthew T. G., Davies, Frances J., Lawrenson, Richard A., Farzaneh, Leili, Bentley, Stephen D., Efstratiou, Androulla, Sriskandan, Shiranee
Published 2013

Roary: rapid large-scale prokaryote pan genome analysis

by Page, Andrew J., Cummins, Carla A., Hunt, Martin, Wong, Vanessa K., Reuter, Sandra, Holden, Matthew T.G., Fookes, Maria, Falush, Daniel, Keane, Jacqueline A., Parkhill, Julian
Published 2015

Emergence of a New Highly Successful Acapsular Group A Streptococcus Clade of Genotype emm89 in the United Kingdom

by Turner, Claire E., Abbott, James, Lamagni, Theresa, Holden, Matthew T. G., David, Sophia, Jones, Michael D., Game, Laurence, Efstratiou, Androulla, Sriskandan, Shiranee
Published 2015

The Ess/Type VII secretion system of Staphylococcus aureus shows unexpected genetic diversity

by Warne, Ben, Harkins, Catriona P., Harris, Simon R., Vatsiou, Alexandra, Stanley-Wall, Nicola, Parkhill, Julian, Peacock, Sharon J., Palmer, Tracy, Holden, Matthew T. G.
Published 2016

Whole-genome sequencing reveals clonal expansion of multiresistant Staphylococcus haemolyticus in European hospitals

by Cavanagh, Jorunn Pauline, Hjerde, Erik, Holden, Matthew T. G., Kahlke, Tim, Klingenberg, Claus, Flægstad, Trond, Parkhill, Julian, Bentley, Stephen D., Sollid, Johanna U. Ericson
Published 2014

Microevolution of Burkholderia pseudomallei during an Acute Infection

by Limmathurotsakul, Direk, Holden, Matthew T. G., Coupland, Paul, Price, Erin P., Chantratita, Narisara, Wuthiekanun, Vanaporn, Amornchai, Premjit, Parkhill, Julian, Peacock, Sharon J.
Published 2014

A Very Early-Branching Staphylococcus aureus Lineage Lacking the Carotenoid Pigment Staphyloxanthin

by Holt, Deborah C., Holden, Matthew T.G., Tong, Steven Y.C., Castillo-Ramirez, Santiago, Clarke, Louise, Quail, Michael A., Currie, Bart J., Parkhill, Julian, Bentley, Stephen D., Feil, Edward J., Giffard, Philip M.
Published 2011

Routine Use of Microbial Whole Genome Sequencing in Diagnostic and Public Health Microbiology

by Köser, Claudio U., Ellington, Matthew J., Cartwright, Edward J. P., Gillespie, Stephen H., Brown, Nicholas M., Farrington, Mark, Holden, Matthew T. G., Dougan, Gordon, Bentley, Stephen D., Parkhill, Julian, Peacock, Sharon J.
Published 2012

Superantigenic Activity of emm3 Streptococcus pyogenes Is Abrogated by a Conserved, Naturally Occurring smeZ Mutation

by Turner, Claire E., Sommerlad, Mary, McGregor, Karen, Davies, Frances J., Pichon, Bruno, Chong, Deborah L. W., Farzaneh, Leili, Holden, Matthew T. G., Spratt, Brian G., Efstratiou, Androulla, Sriskandan, Shiranee
Published 2012

Rapid single-colony whole-genome sequencing of bacterial pathogens

by Köser, Claudio U., Fraser, Louise J., Ioannou, Avgousta, Becq, Jennifer, Ellington, Matthew J., Holden, Matthew T. G., Reuter, Sandra, Török, M. Estée, Bentley, Stephen D., Parkhill, Julian, Gormley, Niall A., Smith, Geoffrey P., Peacock, Sharon J.
Published 2014

Novel mutations in penicillin-binding protein genes in clinical Staphylococcus aureus isolates that are methicillin resistant on susceptibility testing, but lack the mec gene

by Ba, Xiaoliang, Harrison, Ewan M., Edwards, Giles F., Holden, Matthew T. G., Larsen, Anders Rhod, Petersen, Andreas, Skov, Robert L., Peacock, Sharon J., Parkhill, Julian, Paterson, Gavin K., Holmes, Mark A.
Published 2014

A Shared Population of Epidemic Methicillin-Resistant Staphylococcus aureus 15 Circulates in Humans and Companion Animals

by Harrison, Ewan M., Weinert, Lucy A., Holden, Matthew T. G., Welch, John J., Wilson, Katherine, Morgan, Fiona J. E., Harris, Simon R., Loeffler, Anette, Boag, Amanda K., Peacock, Sharon J., Paterson, Gavin K., Waller, Andrew S., Parkhill, Julian, Holmes, Mark A.
Published 2014

A novel hybrid SCCmec-mecC region in Staphylococcus sciuri

by Harrison, Ewan M., Paterson, Gavin K., Holden, Matthew T. G., Ba, Xiaoliang, Rolo, Joana, Morgan, Fiona J. E., Pichon, Bruno, Kearns, Angela, Zadoks, Ruth N., Peacock, Sharon J., Parkhill, Julian, Holmes, Mark A.
Published 2014

ICEApl1, an Integrative Conjugative Element Related to ICEHin1056, Identified in the Pig Pathogen Actinobacillus pleuropneumoniae

by Bossé, Janine T., Li, Yanwen, Fernandez Crespo, Roberto, Chaudhuri, Roy R., Rogers, Jon, Holden, Matthew T. G., Maskell, Duncan J., Tucker, Alexander W., Wren, Brendan W., Rycroft, Andrew N., Langford, Paul R.
Published 2016

Whole genome investigation of a divergent clade of the pathogen Streptococcus suis

by Baig, Abiyad, Weinert, Lucy A., Peters, Sarah E., Howell, Kate J., Chaudhuri, Roy R., Wang, Jinhong, Holden, Matthew T. G., Parkhill, Julian, Langford, Paul R., Rycroft, Andrew N., Wren, Brendan W., Tucker, Alexander W., Maskell, Duncan J.
Published 2015

Corrigendum to ‘Characterisation of a mobilisable plasmid conferring florfenicol and chloramphenicol resistance in Actinobacillus pleuropneumoniae’ [Veterinary Microbiology 178 (20...

by Bossé, Janine T., Li, Yanwen, Atherton, Tom G., Walker, Stephanie, Williamson, Susanna M., Rogers, Jon, Chaudhuri, Roy R., Weinert, Lucy A., Holden, Matthew T.G., Maskell, Duncan J., Tucker, Alexander W., Wren, Brendan W., Rycroft, Andrew N., Langford, Paul R.
Published 2015

Emergent and evolving antimicrobial resistance cassettes in community-associated fusidic acid and meticillin-resistant Staphylococcus aureus

by Ellington, Matthew J., Reuter, Sandra, Harris, Simon R., Holden, Matthew T.G., Cartwright, Edward J., Greaves, Daniel, Gerver, Sarah M., Hope, Russell, Brown, Nicholas M., Török, M. Estee, Parkhill, Julian, Köser, Claudio U., Peacock, Sharon J.
Published 2015