Logical Gene Ontology Annotations (GOAL): exploring gene ontology annotations with OWL

by Jupp, Simon, Stevens, Robert, Hoehndorf, Robert
Published 2012

Developing a kidney and urinary pathway knowledge base

by Jupp, Simon, Klein, Julie, Schanstra, Joost, Stevens, Robert
Published 2011

The KUPNetViz: a biological network viewer for multiple -omics datasets in kidney diseases

by Moulos, Panagiotis, Klein, Julie, Jupp, Simon, Stevens, Robert, Bascands, Jean-Loup, Schanstra, Joost P
Published 2013

Populous: a tool for building OWL ontologies from templates

by Jupp, Simon, Horridge, Matthew, Iannone, Luigi, Klein, Julie, Owen, Stuart, Schanstra, Joost, Wolstencroft, Katy, Stevens, Robert
Published 2012

Webulous and the Webulous Google Add-On - a web service and application for ontology building from templates

by Jupp, Simon, Burdett, Tony, Welter, Danielle, Sarntivijai, Sirarat, Parkinson, Helen, Malone, James
Published 2016

Developing a web-based SKOS editor

by Conway, Mike, Khojoyan, Artem, Fana, Fariba, Scuba, William, Castine, Melissa, Mowery, Danielle, Chapman, Wendy, Jupp, Simon
Published 2016

Ten Simple Rules for Selecting a Bio-ontology

by Malone, James, Stevens, Robert, Jupp, Simon, Hancocks, Tom, Parkinson, Helen, Brooksbank, Cath
Published 2016

The cellular microscopy phenotype ontology

by Jupp, Simon, Malone, James, Burdett, Tony, Heriche, Jean-Karim, Williams, Eleanor, Ellenberg, Jan, Parkinson, Helen, Rustici, Gabriella
Published 2016

Linking rare and common disease: mapping clinical disease-phenotypes to ontologies in therapeutic target validation

by Sarntivijai, Sirarat, Vasant, Drashtti, Jupp, Simon, Saunders, Gary, Bento, A. Patrícia, Gonzalez, Daniel, Betts, Joanna, Hasan, Samiul, Koscielny, Gautier, Dunham, Ian, Parkinson, Helen, Malone, James
Published 2016

The EBI RDF platform: linked open data for the life sciences

by Jupp, Simon, Malone, James, Bolleman, Jerven, Brandizi, Marco, Davies, Mark, Garcia, Leyla, Gaulton, Anna, Gehant, Sebastien, Laibe, Camille, Redaschi, Nicole, Wimalaratne, Sarala M., Martin, Maria, Le Novère, Nicolas, Parkinson, Helen, Birney, Ewan, Jenkinson, Andrew M.
Published 2014

Expression Atlas update—a database of gene and transcript expression from microarray- and sequencing-based functional genomics experiments

by Petryszak, Robert, Burdett, Tony, Fiorelli, Benedetto, Fonseca, Nuno A., Gonzalez-Porta, Mar, Hastings, Emma, Huber, Wolfgang, Jupp, Simon, Keays, Maria, Kryvych, Nataliya, McMurry, Julie, Marioni, John C., Malone, James, Megy, Karine, Rustici, Gabriella, Tang, Amy Y., Taubert, Jan, Williams, Eleanor, Mannion, Oliver, Parkinson, Helen E., Brazma, Alvis
Published 2014

Expression Atlas update—an integrated database of gene and protein expression in humans, animals and plants

by Petryszak, Robert, Keays, Maria, Tang, Y. Amy, Fonseca, Nuno A., Barrera, Elisabet, Burdett, Tony, Füllgrabe, Anja, Fuentes, Alfonso Muñoz-Pomer, Jupp, Simon, Koskinen, Satu, Mannion, Oliver, Huerta, Laura, Megy, Karine, Snow, Catherine, Williams, Eleanor, Barzine, Mitra, Hastings, Emma, Weisser, Hendrik, Wright, James, Jaiswal, Pankaj, Huber, Wolfgang, Choudhary, Jyoti, Parkinson, Helen E., Brazma, Alvis
Published 2016

The health care and life sciences community profile for dataset descriptions

by Dumontier, Michel, Gray, Alasdair J.G., Marshall, M. Scott, Alexiev, Vladimir, Ansell, Peter, Bader, Gary, Baran, Joachim, Bolleman, Jerven T., Callahan, Alison, Cruz-Toledo, José, Gaudet, Pascale, Gombocz, Erich A., Gonzalez-Beltran, Alejandra N., Groth, Paul, Haendel, Melissa, Ito, Maori, Jupp, Simon, Juty, Nick, Katayama, Toshiaki, Kobayashi, Norio, Krishnaswami, Kalpana, Laibe, Camille, Le Novère, Nicolas, Lin, Simon, Malone, James, Miller, Michael, Mungall, Christopher J., Rietveld, Laurens, Wimalaratne, Sarala M., Yamaguchi, Atsuko
Published 2016

Proceedings of a Sickle Cell Disease Ontology workshop — Towards the first comprehensive ontology for Sickle Cell Disease

by Mulder, Nicola, Nembaware, Victoria, Adekile, Adekunle, Anie, Kofi A., Inusa, Baba, Brown, Biobele, Campbell, Andrew, Chinenere, Furahini, Chunda-Liyoka, Catherine, Derebail, Vimal K., Geard, Amy, Ghedira, Kais, Hamilton, Carol M., Hanchard, Neil A., Haendel, Melissa, Huggins, Wayne, Ibrahim, Muntaser, Jupp, Simon, Kamga, Karen Kengne, Knight-Madden, Jennifer, Lopez-Sall, Philomène, Mbiyavanga, Mamana, Munube, Deogratias, Nirenberg, Damian, Nnodu, Obiageli, Ofori-Acquah, Solomon Fiifi, Ohene-Frempong, Kwaku, Opap, Kenneth Babu, Panji, Sumir, Park, Miriam, Pule, Gift, Royal, Charmaine, Sangeda, Raphael, Tayo, Bamidele, Treadwell, Marsha, Tshilolo, Léon, Wonkam, Ambroise
Published 2016