Draft Genome Sequence of the Dimorphic Yeast Yarrowia lipolytica Strain W29

by Pomraning, Kyle R., Baker, Scott E.
Published 2015

A versatile toolkit for high throughput functional genomics with Trichoderma reesei

by Schuster, André, Bruno, Kenneth S, Collett, James R, Baker, Scott E, Seiboth, Bernhard, Kubicek, Christian P, Schmoll, Monika
Published 2012

Rediscovery by Whole Genome Sequencing: Classical Mutations and Genome Polymorphisms in Neurospora crassa

by McCluskey, Kevin, Wiest, Aric E., Grigoriev, Igor V., Lipzen, Anna, Martin, Joel, Schackwitz, Wendy, Baker, Scott E.
Published 2011

Compartmentalized microchannel array for high-throughput analysis of single cell polarized growth and dynamics

by Geng, Tao, Bredeweg, Erin L., Szymanski, Craig J., Liu, Bingwen, Baker, Scott E., Orr, Galya, Evans, James E., Kelly, Ryan T.
Published 2015

The putative protein methyltransferase LAE1 controls cellulase gene expression in Trichoderma reesei

by Seiboth, Bernhard, Karimi, Razieh Aghcheh, Phatale, Pallavi A, Linke, Rita, Hartl, Lukas, Sauer, Dominik G, Smith, Kristina M, Baker, Scott E, Freitag, Michael, Kubicek, Christian P
Published 2012

Post-genomic approaches to understanding interactions between fungi and their environment

by de Vries, Ronald P., Benoit, Isabelle, Doehlemann, Gunther, Kobayashi, Tetsuo, Magnuson, Jon K., Panisko, Ellen A., Baker, Scott E., Lebrun, Marc-Henri
Published 2011

Genome Sequence of the Mucoromycotina Fungus Umbelopsis isabellina, an Effective Producer of Lipids

by Takeda, Itaru, Tamano, Koichi, Yamane, Noriko, Ishii, Tomoko, Miura, Ai, Umemura, Myco, Terai, Goro, Baker, Scott E., Koike, Hideaki, Machida, Masayuki
Published 2014

Genome sequencing of the Trichoderma reesei QM9136 mutant identifies a truncation of the transcriptional regulator XYR1 as the cause for its cellulase-negative phenotype

by Lichius, Alexander, Bidard, Frédérique, Buchholz, Franziska, Le Crom, Stéphane, Martin, Joel, Schackwitz, Wendy, Austerlitz, Tina, Grigoriev, Igor V, Baker, Scott E, Margeot, Antoine, Seiboth, Bernhard, Kubicek, Christian P
Published 2015

Comprehensive Metabolomic, Lipidomic and Microscopic Profiling of Yarrowia lipolytica during Lipid Accumulation Identifies Targets for Increased Lipogenesis

by Pomraning, Kyle R., Wei, Siwei, Karagiosis, Sue A., Kim, Young-Mo, Dohnalkova, Alice C., Arey, Bruce W., Bredeweg, Erin L., Orr, Galya, Metz, Thomas O., Baker, Scott E.
Published 2015

Genome Sequence and Annotation of Trichoderma parareesei, the Ancestor of the Cellulase Producer Trichoderma reesei

by Yang, Dongqing, Pomraning, Kyle, Kopchinskiy, Alexey, Karimi Aghcheh, Razieh, Atanasova, Lea, Chenthamara, Komal, Baker, Scott E., Zhang, Ruifu, Shen, Qirong, Freitag, Michael, Kubicek, Christian P., Druzhinina, Irina S.
Published 2015

Erratum to: Genome sequencing of the Trichoderma reesei QM9136 mutant identifies a truncation of the transcriptional regulator XYR1 as the cause for its cellulase-negative phenotyp...

by Lichius, Alexander, Bidard, Frédérique, Buchholz, Franziska, Le Crom, Stéphane, Martin, Joel, Schackwitz, Wendy, Austerlitz, Tina, Grigoriev, Igor V., Baker, Scott E., Margeot, Antoine, Seiboth, Bernhard, Kubicek, Christian P.
Published 2015

Identification of a Classical Mutant in the Industrial Host Aspergillus niger by Systems Genetics: LaeA Is Required for Citric Acid Production and Regulates the Formation of Some S...

by Niu, Jing, Arentshorst, Mark, Nair, P. Deepa S., Dai, Ziyu, Baker, Scott E., Frisvad, Jens C., Nielsen, Kristian F., Punt, Peter J., Ram, Arthur F.J.
Published 2015

Multi-omics analysis reveals regulators of the response to nitrogen limitation in Yarrowia lipolytica

by Pomraning, Kyle R., Kim, Young-Mo, Nicora, Carrie D., Chu, Rosalie K., Bredeweg, Erin L., Purvine, Samuel O., Hu, Dehong, Metz, Thomas O., Baker, Scott E.
Published 2016

Draft Genome Sequence of Neurospora crassa Strain FGSC 73

by Baker, Scott E., Schackwitz, Wendy, Lipzen, Anna, Martin, Joel, Haridas, Sajeet, LaButti, Kurt, Grigoriev, Igor V., Simmons, Blake A., McCluskey, Kevin
Published 2015

Functional Analyses of Trichoderma reesei LAE1 Reveal Conserved and Contrasting Roles of This Regulator

by Karimi-Aghcheh, Razieh, Bok, Jin Woo, Phatale, Pallavi A., Smith, Kristina M., Baker, Scott E., Lichius, Alexander, Omann, Markus, Zeilinger, Susanne, Seiboth, Bernhard, Rhee, Catherine, Keller, Nancy P., Freitag, Michael, Kubicek, Christian P.
Published 2013

Comparative Genome Structure, Secondary Metabolite, and Effector Coding Capacity across Cochliobolus Pathogens

by Condon, Bradford J., Leng, Yueqiang, Wu, Dongliang, Bushley, Kathryn E., Ohm, Robin A., Otillar, Robert, Martin, Joel, Schackwitz, Wendy, Grimwood, Jane, MohdZainudin, NurAinIzzati, Xue, Chunsheng, Wang, Rui, Manning, Viola A., Dhillon, Braham, Tu, Zheng Jin, Steffenson, Brian J., Salamov, Asaf, Sun, Hui, Lowry, Steve, LaButti, Kurt, Han, James, Copeland, Alex, Lindquist, Erika, Barry, Kerrie, Schmutz, Jeremy, Baker, Scott E., Ciuffetti, Lynda M., Grigoriev, Igor V., Zhong, Shaobin, Turgeon, B. Gillian
Published 2013

Comparative genome sequence analysis underscores mycoparasitism as the ancestral life style of Trichoderma

by Kubicek, Christian P, Herrera-Estrella, Alfredo, Seidl-Seiboth, Verena, Martinez, Diego A, Druzhinina, Irina S, Thon, Michael, Zeilinger, Susanne, Casas-Flores, Sergio, Horwitz, Benjamin A, Mukherjee, Prasun K, Mukherjee, Mala, Kredics, László, Alcaraz, Luis D, Aerts, Andrea, Antal, Zsuzsanna, Atanasova, Lea, Cervantes-Badillo, Mayte G, Challacombe, Jean, Chertkov, Olga, McCluskey, Kevin, Coulpier, Fanny, Deshpande, Nandan, von Döhren, Hans, Ebbole, Daniel J, Esquivel-Naranjo, Edgardo U, Fekete, Erzsébet, Flipphi, Michel, Glaser, Fabian, Gómez-Rodríguez, Elida Y, Gruber, Sabine, Han, Cliff, Henrissat, Bernard, Hermosa, Rosa, Hernández-Oñate, Miguel, Karaffa, Levente, Kosti, Idit, Le Crom, Stéphane, Lindquist, Erika, Lucas, Susan, Lübeck, Mette, Lübeck, Peter S, Margeot, Antoine, Metz, Benjamin, Misra, Monica, Nevalainen, Helena, Omann, Markus, Packer, Nicolle, Perrone, Giancarlo, Uresti-Rivera, Edith E, Salamov, Asaf, Schmoll, Monika, Seiboth, Bernhard, Shapiro, Harris, Sukno, Serenella, Tamayo-Ramos, Juan Antonio, Tisch, Doris, Wiest, Aric, Wilkinson, Heather H, Zhang, Michael, Coutinho, Pedro M, Kenerley, Charles M, Monte, Enrique, Baker, Scott E, Grigoriev, Igor V
Published 2011

Comparative genomics reveals high biological diversity and specific adaptations in the industrially and medically important fungal genus Aspergillus

by Vries, Ronald P. de, Riley, Robert, Wiebenga, Ad, Aguilar-Osorio, Guillermo, Amillis, Sotiris, Akemi Uchima, Cristiane, Anderluh, Gregor, Asaollahi, Mojtaba, Askin, Marion, Barry, Kerrie, Battaglia, Evy, Bayram, Ozgur, Benocci, Tiziano, Braus-Stromeyer, Susanna A., Caldana, Camila, Cánovas, David, Cerqueira, Gustavo C., Chen, Fusheng, Chen, Wanping, Choi, Cindy, Clum, Alicia, Corrêa dos Santos, Renato Augusto, Lima Damásio, André Ricardo de, Diallinas, George, Emri, Tamás, Fekete, Erzébet, Flipphi, Michel, Freyburg, Susanne, Gallo, Antonia, Gournas, Christos, Habgood, Rob, Hainaut, Matthieu, Harispe, Maria Laura, Henrissat, Bernard, Hildén, Kristiina S., Hope, Ryan, Hossain, Abeer, Karabika, Eugenia, Karaffa, Levente, Karanyi, Zsolt, Krasevec, Nada, Kuo, Alan, Kusch, Harald, LaButti, Kurt, Lagendijk, Ellen L., Lapidus, Alla, Levasseur, Anthony, Lindquist, Erika, Lipzen, Anna, Logrieco, Antonio F., MacCabe, Andrew, Mäkela, Miia R., Malavazi, Iran, Melin, Petter, Meyer, Vera, Mielnichuk, Natalia, Miskei, Márton, Molnár, Ákos P., Mulé, Giuseppina, Ngan, Chew Yee, Orejas, Margarita, Orosz, Erzsébet, Ouedraogo, Jean Paul, Overkamp, Karin M., Park, Hee-Soo, Perrone, Giancarlo, Piumi, Francois, Punt, Peter J., Ram, Arthur F.J., Ramon, Ana, Rauscher, Stefan, Record, Eric, Riaño-Pachón, Diego Mauricio, Robert, Vincent, Röhrig, Julian, Ruller, Roberto, Salamov, Asaf, Salih, Nadhira S., Samson, Rob A., Sándor, Erzsébet, Sanguinetti, Manuel, Schütze, Tabea, Sepčić, Kristina, Shelest, Ekaterina, Sherlock, Gavin, Sophianopoulou, Vicky, Squina, Fabio M., Sun, Hui, Susca, Antonia, Todd, Richard B., Tsang, Adrian, Unkles, Shiela E., Wiele, Nathalie van de, Rossen-Uffink, Diana van, Velasco de Castro Oliveira, Juliana, Vesth, Tammi C., Visser, Jaap, Yu, Jae-Hyuk, Zhou, Miaomiao, Andersen, Mikael R., Archer, David B., Baker, Scott E., Benoit, Isabelle, Brakhage, Axel A., Braus, Gerhard H., Fischer, Reinhard, Frisvad, Jens C., Goldman, Gustavo H., Houbraken, Jos, Oakley, Berl, Pócsi, István, Scazzocchio, Claudio, Seiboth, Bernhard, vanKuyk, Patricia A., Wortman, Jennifer, Dyer, Paul S., Grigoriev, Igor V.
Published 2017