Multi-omics analysis reveals regulators of the response to nitrogen limitation in Yarrowia lipolytica

by Pomraning, Kyle R., Kim, Young-Mo, Nicora, Carrie D., Chu, Rosalie K., Bredeweg, Erin L., Purvine, Samuel O., Hu, Dehong, Metz, Thomas O., Baker, Scott E.
Published 2016

Coupled transcriptome and proteome analysis of human lymphotropic tumor viruses: insights on the detection and discovery of viral genes

by Dresang, Lindsay R, Teuton, Jeremy R, Feng, Huichen, Jacobs, Jon M, Camp, David G, Purvine, Samuel O, Gritsenko, Marina A, Li, Zhihua, Smith, Richard D, Sugden, Bill, Moore, Patrick S, Chang, Yuan
Published 2011

Basophile: Accurate Fragment Charge State Prediction Improves Peptide Identification Rates

by Wang, Dong, Dasari, Surendra, Chambers, Matthew C., Holman, Jerry D., Chen, Kan, Liebler, Daniel C., Orton, Daniel J., Purvine, Samuel O., Monroe, Matthew E., Chung, Chang Y., Rose, Kristie L., Tabb, David L.
Published 2013

The Pacific Northwest National Laboratory library of bacterial and archaeal proteomic biodiversity

by Payne, Samuel H., Monroe, Matthew E., Overall, Christopher C., Kiebel, Gary R., Degan, Michael, Gibbons, Bryson C., Fujimoto, Grant M., Purvine, Samuel O., Adkins, Joshua N., Lipton, Mary S., Smith, Richard D.
Published 2015

Automated Genome Mining of Ribosomal Peptide Natural Products

by Mohimani, Hosein, Kersten, Roland D., Liu, Wei-Ting, Wang, Mingxun, Purvine, Samuel O., Wu, Si, Brewer, Heather M., Pasa-Tolic, Ljiljana, Bandeira, Nuno, Moore, Bradley S., Pevzner, Pavel A., Dorrestein, Pieter C.
Published 2014

Comparative Analysis of Secretome Profiles of Manganese(II)-Oxidizing Ascomycete Fungi

by Zeiner, Carolyn A., Purvine, Samuel O., Zink, Erika M., Paša-Tolić, Ljiljana, Chaput, Dominique L., Haridas, Sajeet, Wu, Si, LaButti, Kurt, Grigoriev, Igor V., Henrissat, Bernard, Santelli, Cara M., Hansel, Colleen M.
Published 2016

Comparative Omics-Driven Genome Annotation Refinement: Application across Yersiniae

by Schrimpe-Rutledge, Alexandra C., Jones, Marcus B., Chauhan, Sadhana, Purvine, Samuel O., Sanford, James A., Monroe, Matthew E., Brewer, Heather M., Payne, Samuel H., Ansong, Charles, Frank, Bryan C., Smith, Richard D., Peterson, Scott N., Motin, Vladimir L., Adkins, Joshua N.
Published 2012

Experimental annotation of post-translational features and translated coding regions in the pathogen Salmonella Typhimurium

by Ansong, Charles, Tolić, Nikola, Purvine, Samuel O, Porwollik, Steffen, Jones, Marcus, Yoon, Hyunjin, Payne, Samuel H, Martin, Jessica L, Burnet, Meagan C, Monroe, Matthew E, Venepally, Pratap, Smith, Richard D, Peterson, Scott N, Heffron, Fred, McClelland, Michael, Adkins, Joshua N
Published 2011

Correction: Comparative Omics-Driven Genome Annotation Refinement: Application across Yersiniae

by Schrimpe-Rutledge, Alexandra C., Jones, Marcus B., Chauhan, Sadhana, Purvine, Samuel O., Sanford, James A., Monroe, Matthew E., Brewer, Heather M., Payne, Samuel H., Ansong, Charles, Frank, Bryan C., Smith, Richard D., Peterson, Scott N., Motin, Vladimir L., Adkins, Joshua N.
Published 2012

A Multi-Omic View of Host-Pathogen-Commensal Interplay in Salmonella-Mediated Intestinal Infection

by Deatherage Kaiser, Brooke L., Li, Jie, Sanford, James A., Kim, Young-Mo, Kronewitter, Scott R., Jones, Marcus B., Peterson, Christine T., Peterson, Scott N., Frank, Bryan C., Purvine, Samuel O., Brown, Joseph N., Metz, Thomas O., Smith, Richard D., Heffron, Fred, Adkins, Joshua N.
Published 2013

Enrichment and Broad Representation of Plant Biomass-Degrading Enzymes in the Specialized Hyphal Swellings of Leucoagaricus gongylophorus, the Fungal Symbiont of Leaf-Cutter Ants

by Aylward, Frank O., Khadempour, Lily, Tremmel, Daniel M., McDonald, Bradon R., Nicora, Carrie D., Wu, Si, Moore, Ronald J., Orton, Daniel J., Monroe, Matthew E., Piehowski, Paul D., Purvine, Samuel O., Smith, Richard D., Lipton, Mary S., Burnum-Johnson, Kristin E., Currie, Cameron R.
Published 2015

Evidence-based green algal genomics reveals marine diversity and ancestral characteristics of land plants

by van Baren, Marijke J., Bachy, Charles, Reistetter, Emily Nahas, Purvine, Samuel O., Grimwood, Jane, Sudek, Sebastian, Yu, Hang, Poirier, Camille, Deerinck, Thomas J., Kuo, Alan, Grigoriev, Igor V., Wong, Chee-Hong, Smith, Richard D., Callister, Stephen J., Wei, Chia-Lin, Schmutz, Jeremy, Worden, Alexandra Z.
Published 2016

Correction: Enrichment and Broad Representation of Plant Biomass-Degrading Enzymes in the Specialized Hyphal Swellings of Leucoagaricus gongylophorus, the Fungal Symbiont of Leaf-C...

by Aylward, Frank O., Khadempour, Lily, Tremmel, Daniel M., McDonald, Bradon R., Nicora, Carrie D., Wu, Si, Moore, Ronald J., Orton, Daniel J., Monroe, Matthew E., Piehowski, Paul D., Purvine, Samuel O., Smith, Richard D., Lipton, Mary S., Burnum-Johnson, Kristin E., Currie, Cameron R.
Published 2015

A comprehensive collection of systems biology data characterizing the host response to viral infection

by Aevermann, Brian D., Pickett, Brett E., Kumar, Sanjeev, Klem, Edward B., Agnihothram, Sudhakar, Askovich, Peter S., Bankhead, Armand, Bolles, Meagen, Carter, Victoria, Chang, Jean, Clauss, Therese R.W., Dash, Pradyot, Diercks, Alan H., Eisfeld, Amie J., Ellis, Amy, Fan, Shufang, Ferris, Martin T., Gralinski, Lisa E., Green, Richard R., Gritsenko, Marina A., Hatta, Masato, Heegel, Robert A., Jacobs, Jon M., Jeng, Sophia, Josset, Laurence, Kaiser, Shari M., Kelly, Sara, Law, G. Lynn, Li, Chengjun, Li, Jiangning, Long, Casey, Luna, Maria L., Matzke, Melissa, McDermott, Jason, Menachery, Vineet, Metz, Thomas O., Mitchell, Hugh, Monroe, Matthew E., Navarro, Garnet, Neumann, Gabriele, Podyminogin, Rebecca L., Purvine, Samuel O., Rosenberger, Carrie M., Sanders, Catherine J., Schepmoes, Athena A., Shukla, Anil K., Sims, Amy, Sova, Pavel, Tam, Vincent C., Tchitchek, Nicolas, Thomas, Paul G., Tilton, Susan C., Totura, Allison, Wang, Jing, Webb-Robertson, Bobbie-Jo, Wen, Ji, Weiss, Jeffrey M., Yang, Feng, Yount, Boyd, Zhang, Qibin, McWeeney, Shannon, Smith, Richard D., Waters, Katrina M., Kawaoka, Yoshihiro, Baric, Ralph, Aderem, Alan, Katze, Michael G., Scheuermann, Richard H.
Published 2014