Chromatin loops, gene positioning, and gene expression

by Holwerda, Sjoerd, de Laat, Wouter
Published 2012

Getting the genome in shape: the formation of loops, domains and compartments

by Bouwman, Britta AM, de Laat, Wouter
Published 2015

Maintenance of Long-Range DNA Interactions after Inhibition of Ongoing RNA Polymerase II Transcription

by Palstra, Robert-Jan, Simonis, Marieke, Klous, Petra, Brasset, Emilie, Eijkelkamp, Bart, de Laat, Wouter
Published 2008

3D chromatin conformation correlates with replication timing and is conserved in resting cells

by Moindrot, Benoit, Audit, Benjamin, Klous, Petra, Baker, Antoine, Thermes, Claude, de Laat, Wouter, Bouvet, Philippe, Mongelard, Fabien, Arneodo, Alain
Published 2012

Cell-of-Origin-Specific 3D Genome Structure Acquired during Somatic Cell Reprogramming

by Krijger, Peter Hugo Lodewijk, Di Stefano, Bruno, de Wit, Elzo, Limone, Francesco, van Oevelen, Chris, de Laat, Wouter, Graf, Thomas
Published 2016

Interactions among Polycomb Domains Are Guided by Chromosome Architecture

by Tolhuis, Bas, Blom, Marleen, Kerkhoven, Ron M., Pagie, Ludo, Teunissen, Hans, Nieuwland, Marja, Simonis, Marieke, de Laat, Wouter, van Lohuizen, Maarten, van Steensel, Bas
Published 2011

Allelic exclusion of the immunoglobulin heavy chain locus is independent of its nuclear localization in mature B cells

by Holwerda, Sjoerd J. B., van de Werken, Harmen J. G., Ribeiro de Almeida, Claudia, Bergen, Ingrid M., de Bruijn, Marjolein J. W., Verstegen, Marjon J. A. M., Simonis, Marieke, Splinter, Erik, Wijchers, Patrick J., Hendriks, Rudi W., de Laat, Wouter
Published 2013

Genome-wide analysis of FOXO3 mediated transcription regulation through RNA polymerase II profiling

by Eijkelenboom, Astrid, Mokry, Michal, de Wit, Elzo, Smits, Lydia M, Polderman, Paulien E, van Triest, Miranda H, van Boxtel, Ruben, Schulze, Almut, de Laat, Wouter, Cuppen, Edwin, Burgering, Boudewijn M T
Published 2013

Quantitative analysis of chromatin interaction changes upon a 4.3 Mb deletion at mouse 4E2

by Zepeda-Mendoza, Cinthya J., Mukhopadhyay, Swagatam, Wong, Emily S., Harder, Nathalie, Splinter, Erik, de Wit, Elzo, Eckersley-Maslin, Melanie A., Ried, Thomas, Eils, Roland, Rohr, Karl, Mills, Alea, de Laat, Wouter, Flicek, Paul, Sengupta, Anirvan M., Spector, David L.
Published 2015

Cause and Consequence of Tethering a SubTAD to Different Nuclear Compartments

by Wijchers, Patrick J., Krijger, Peter H.L., Geeven, Geert, Zhu, Yun, Denker, Annette, Verstegen, Marjon J.A.M., Valdes-Quezada, Christian, Vermeulen, Carlo, Janssen, Mark, Teunissen, Hans, Anink-Groenen, Lisette C.M., Verschure, Pernette J., de Laat, Wouter
Published 2016

Enhancers reside in a unique epigenetic environment during early zebrafish development

by Kaaij, Lucas J. T., Mokry, Michal, Zhou, Meng, Musheev, Michael, Geeven, Geert, Melquiond, Adrien S. J., de Jesus Domingues, António M., de Laat, Wouter, Niehrs, Christof, Smith, Andrew D., Ketting, René F.
Published 2016

DNA methylation dynamics during intestinal stem cell differentiation reveals enhancers driving gene expression in the villus

by Kaaij, Lucas TJ, van de Wetering, Marc, Fang, Fang, Decato, Benjamin, Molaro, Antoine, van de Werken, Harmen JG, van Es, Johan H, Schuijers, Jurian, de Wit, Elzo, de Laat, Wouter, Hannon, Gregory J, Clevers, Hans C, Smith, Andrew D, Ketting, René F
Published 2013

Dynamics of gene silencing during X inactivation using allele-specific RNA-seq

by Marks, Hendrik, Kerstens, Hindrik H. D., Barakat, Tahsin Stefan, Splinter, Erik, Dirks, René A. M., van Mierlo, Guido, Joshi, Onkar, Wang, Shuang-Yin, Babak, Tomas, Albers, Cornelis A., Kalkan, Tüzer, Smith, Austin, Jouneau, Alice, de Laat, Wouter, Gribnau, Joost, Stunnenberg, Hendrik G.
Published 2015

Discovery and validation of sub-threshold genome-wide association study loci using epigenomic signatures

by Wang, Xinchen, Tucker, Nathan R, Rizki, Gizem, Mills, Robert, Krijger, Peter HL, de Wit, Elzo, Subramanian, Vidya, Bartell, Eric, Nguyen, Xinh-Xinh, Ye, Jiangchuan, Leyton-Mange, Jordan, Dolmatova, Elena V, van der Harst, Pim, de Laat, Wouter, Ellinor, Patrick T, Newton-Cheh, Christopher, Milan, David J, Kellis, Manolis, Boyer, Laurie A
Published 2016

Local compartment changes and regulatory landscape alterations in histone H1-depleted cells

by Geeven, Geert, Zhu, Yun, Kim, Byung Ju, Bartholdy, Boris A., Yang, Seung-Min, Macfarlan, Todd S., Gifford, Wesley D., Pfaff, Samuel L., Verstegen, Marjon J. A. M., Pinto, Hugo, Vermunt, Marit W., Creyghton, Menno P., Wijchers, Patrick J., Stamatoyannopoulos, John A., Skoultchi, Arthur I., de Laat, Wouter
Published 2015

Erratum to: Dynamics of gene silencing during X inactivation using allele-specific RNA-seq

by Marks, Hendrik, Kerstens, Hindrik H. D., Barakat, Tahsin Stefan, Splinter, Erik, Dirks, René A. M., van Mierlo, Guido, Joshi, Onkar, Wang, Shuang-Yin, Babak, Tomas, Albers, Cornelis A., Kalkan, Tüzer, Smith, Austin, Jouneau, Alice, de Laat, Wouter, Gribnau, Joost, Stunnenberg, Hendrik G.
Published 2016

Genome-wide profiling of p53-regulated enhancer RNAs uncovers a subset of enhancers controlled by a lncRNA

by Léveillé, Nicolas, Melo, Carlos A., Rooijers, Koos, Díaz-Lagares, Angel, Melo, Sonia A., Korkmaz, Gozde, Lopes, Rui, Moqadam, Farhad Akbari, Maia, Ana R., Wijchers, Patrick J., Geeven, Geert, den Boer, Monique L., Kalluri, Raghu, de Laat, Wouter, Esteller, Manel, Agami, Reuven
Published 2015