Spritz: a server for the prediction of intrinsically disordered regions in protein sequences using kernel machines

by Vullo, Alessandro, Bortolami, Oscar, Pollastri, Gianluca, Tosatto, Silvio C. E.
Published 2006

The RING 2.0 web server for high quality residue interaction networks

by Piovesan, Damiano, Minervini, Giovanni, Tosatto, Silvio C.E.
Published 2016

PASTA 2.0: an improved server for protein aggregation prediction

by Walsh, Ian, Seno, Flavio, Tosatto, Silvio C.E., Trovato, Antonio
Published 2014

A Computational Model of the LGI1 Protein Suggests a Common Binding Site for ADAM Proteins

by Leonardi, Emanuela, Andreazza, Simonetta, Vanin, Stefano, Busolin, Giorgia, Nobile, Carlo, Tosatto, Silvio C. E.
Published 2011

Studying Interactions by Molecular Dynamics Simulations at High Concentration

by Fogolari, Federico, Corazza, Alessandra, Toppo, Stefano, Tosatto, Silvio C. E., Viglino, Paolo, Ursini, Fulvio, Esposito, Gennaro
Published 2012

PANADA: Protein Association Network Annotation, Determination and Analysis

by Martin, Alberto J. M., Walsh, Ian, Domenico, Tomás Di, Mičetić, Ivan, Tosatto, Silvio C. E.
Published 2013

Design and Analysis of a Petri Net Model of the Von Hippel-Lindau (VHL) Tumor Suppressor Interaction Network

by Minervini, Giovanni, Panizzoni, Elisabetta, Giollo, Manuel, Masiero, Alessandro, Ferrari, Carlo, Tosatto, Silvio C. E.
Published 2014

VHLdb: A database of von Hippel-Lindau protein interactors and mutations

by Tabaro, Francesco, Minervini, Giovanni, Sundus, Faiza, Quaglia, Federica, Leonardi, Emanuela, Piovesan, Damiano, Tosatto, Silvio C. E.
Published 2016

INGA: protein function prediction combining interaction networks, domain assignments and sequence similarity

by Piovesan, Damiano, Giollo, Manuel, Leonardi, Emanuela, Ferrari, Carlo, Tosatto, Silvio C.E.
Published 2015

BOOGIE: Predicting Blood Groups from High Throughput Sequencing Data

by Giollo, Manuel, Minervini, Giovanni, Scalzotto, Marta, Leonardi, Emanuela, Ferrari, Carlo, Tosatto, Silvio C. E.
Published 2015

MobiDB 2.0: an improved database of intrinsically disordered and mobile proteins

by Potenza, Emilio, Domenico, Tomás Di, Walsh, Ian, Tosatto, Silvio C.E.
Published 2015

CSpritz: accurate prediction of protein disorder segments with annotation for homology, secondary structure and linear motifs

by Walsh, Ian, Martin, Alberto J. M., Di Domenico, Tomàs, Vullo, Alessandro, Pollastri, Gianluca, Tosatto, Silvio C. E.
Published 2011

2mit, an Intronic Gene of Drosophila melanogaster timeless2, Is Involved in Behavioral Plasticity

by Baggio, Francesca, Bozzato, Andrea, Benna, Clara, Leonardi, Emanuela, Romoli, Ottavia, Cognolato, Moira, Tosatto, Silvio C. E., Costa, Rodolfo, Sandrelli, Federica
Published 2013

Isoform-specific interactions of the von Hippel-Lindau tumor suppressor protein

by Minervini, Giovanni, Mazzotta, Gabriella M., Masiero, Alessandro, Sartori, Elena, Corrà, Samantha, Potenza, Emilio, Costa, Rodolfo, Tosatto, Silvio C. E.
Published 2015

Secretion-Positive LGI1 Mutations Linked to Lateral Temporal Epilepsy Impair Binding to ADAM22 and ADAM23 Receptors

by Dazzo, Emanuela, Leonardi, Emanuela, Belluzzi, Elisa, Malacrida, Sandro, Vitiello, Libero, Greggio, Elisa, Tosatto, Silvio C. E., Nobile, Carlo
Published 2016

The role of the N-terminal tail for the oligomerization, folding and stability of human frataxin☆

by Faraj, Santiago E., Venturutti, Leandro, Roman, Ernesto A., Marino-Buslje, Cristina B., Mignone, Astor, Tosatto, Silvio C.E., Delfino, José M., Santos, Javier
Published 2013

RepeatsDB: a database of tandem repeat protein structures

by Di Domenico, Tomás, Potenza, Emilio, Walsh, Ian, Gonzalo Parra, R., Giollo, Manuel, Minervini, Giovanni, Piovesan, Damiano, Ihsan, Awais, Ferrari, Carlo, Kajava, Andrey V., Tosatto, Silvio C.E.
Published 2014

Exploration of alternative splicing events in ten different grapevine cultivars

by Potenza, Emilio, Racchi, Milvia Luisa, Sterck, Lieven, Coller, Emanuela, Asquini, Elisa, Tosatto, Silvio C. E., Velasco, Riccardo, Van de Peer, Yves, Cestaro, Alessandro
Published 2015

Tools and data services registry: a community effort to document bioinformatics resources

by Ison, Jon, Rapacki, Kristoffer, Ménager, Hervé, Kalaš, Matúš, Rydza, Emil, Chmura, Piotr, Anthon, Christian, Beard, Niall, Berka, Karel, Bolser, Dan, Booth, Tim, Bretaudeau, Anthony, Brezovsky, Jan, Casadio, Rita, Cesareni, Gianni, Coppens, Frederik, Cornell, Michael, Cuccuru, Gianmauro, Davidsen, Kristian, Vedova, Gianluca Della, Dogan, Tunca, Doppelt-Azeroual, Olivia, Emery, Laura, Gasteiger, Elisabeth, Gatter, Thomas, Goldberg, Tatyana, Grosjean, Marie, Grüning, Björn, Helmer-Citterich, Manuela, Ienasescu, Hans, Ioannidis, Vassilios, Jespersen, Martin Closter, Jimenez, Rafael, Juty, Nick, Juvan, Peter, Koch, Maximilian, Laibe, Camille, Li, Jing-Woei, Licata, Luana, Mareuil, Fabien, Mičetić, Ivan, Friborg, Rune Møllegaard, Moretti, Sebastien, Morris, Chris, Möller, Steffen, Nenadic, Aleksandra, Peterson, Hedi, Profiti, Giuseppe, Rice, Peter, Romano, Paolo, Roncaglia, Paola, Saidi, Rabie, Schafferhans, Andrea, Schwämmle, Veit, Smith, Callum, Sperotto, Maria Maddalena, Stockinger, Heinz, Vařeková, Radka Svobodová, Tosatto, Silvio C.E., de la Torre, Victor, Uva, Paolo, Via, Allegra, Yachdav, Guy, Zambelli, Federico, Vriend, Gert, Rost, Burkhard, Parkinson, Helen, Løngreen, Peter, Brunak, Søren
Published 2016

An expanded evaluation of protein function prediction methods shows an improvement in accuracy

by Jiang, Yuxiang, Oron, Tal Ronnen, Clark, Wyatt T., Bankapur, Asma R., D’Andrea, Daniel, Lepore, Rosalba, Funk, Christopher S., Kahanda, Indika, Verspoor, Karin M., Ben-Hur, Asa, Koo, Da Chen Emily, Penfold-Brown, Duncan, Shasha, Dennis, Youngs, Noah, Bonneau, Richard, Lin, Alexandra, Sahraeian, Sayed M. E., Martelli, Pier Luigi, Profiti, Giuseppe, Casadio, Rita, Cao, Renzhi, Zhong, Zhaolong, Cheng, Jianlin, Altenhoff, Adrian, Skunca, Nives, Dessimoz, Christophe, Dogan, Tunca, Hakala, Kai, Kaewphan, Suwisa, Mehryary, Farrokh, Salakoski, Tapio, Ginter, Filip, Fang, Hai, Smithers, Ben, Oates, Matt, Gough, Julian, Törönen, Petri, Koskinen, Patrik, Holm, Liisa, Chen, Ching-Tai, Hsu, Wen-Lian, Bryson, Kevin, Cozzetto, Domenico, Minneci, Federico, Jones, David T., Chapman, Samuel, BKC, Dukka, Khan, Ishita K., Kihara, Daisuke, Ofer, Dan, Rappoport, Nadav, Stern, Amos, Cibrian-Uhalte, Elena, Denny, Paul, Foulger, Rebecca E., Hieta, Reija, Legge, Duncan, Lovering, Ruth C., Magrane, Michele, Melidoni, Anna N., Mutowo-Meullenet, Prudence, Pichler, Klemens, Shypitsyna, Aleksandra, Li, Biao, Zakeri, Pooya, ElShal, Sarah, Tranchevent, Léon-Charles, Das, Sayoni, Dawson, Natalie L., Lee, David, Lees, Jonathan G., Sillitoe, Ian, Bhat, Prajwal, Nepusz, Tamás, Romero, Alfonso E., Sasidharan, Rajkumar, Yang, Haixuan, Paccanaro, Alberto, Gillis, Jesse, Sedeño-Cortés, Adriana E., Pavlidis, Paul, Feng, Shou, Cejuela, Juan M., Goldberg, Tatyana, Hamp, Tobias, Richter, Lothar, Salamov, Asaf, Gabaldon, Toni, Marcet-Houben, Marina, Supek, Fran, Gong, Qingtian, Ning, Wei, Zhou, Yuanpeng, Tian, Weidong, Falda, Marco, Fontana, Paolo, Lavezzo, Enrico, Toppo, Stefano, Ferrari, Carlo, Giollo, Manuel, Piovesan, Damiano, Tosatto, Silvio C.E., del Pozo, Angela, Fernández, José M., Maietta, Paolo, Valencia, Alfonso, Tress, Michael L., Benso, Alfredo, Di Carlo, Stefano, Politano, Gianfranco, Savino, Alessandro, Rehman, Hafeez Ur, Re, Matteo, Mesiti, Marco, Valentini, Giorgio, Bargsten, Joachim W., van Dijk, Aalt D. J., Gemovic, Branislava, Glisic, Sanja, Perovic, Vladmir, Veljkovic, Veljko, Veljkovic, Nevena, Almeida-e-Silva, Danillo C., Vencio, Ricardo Z. N., Sharan, Malvika, Vogel, Jörg, Kansakar, Lakesh, Zhang, Shanshan, Vucetic, Slobodan, Wang, Zheng, Sternberg, Michael J. E., Wass, Mark N., Huntley, Rachael P., Martin, Maria J., O’Donovan, Claire, Robinson, Peter N., Moreau, Yves, Tramontano, Anna, Babbitt, Patricia C., Brenner, Steven E., Linial, Michal, Orengo, Christine A., Rost, Burkhard, Greene, Casey S., Mooney, Sean D., Friedberg, Iddo, Radivojac, Predrag
Published 2016