Analysis of strain and regional variation in gene expression in mouse brain

by Pavlidis, Paul, Noble, William S
Published 2001

“Guilt by Association” Is the Exception Rather Than the Rule in Gene Networks

by Gillis, Jesse, Pavlidis, Paul
Published 2012

Characterizing the state of the art in the computational assignment of gene function: lessons from the first critical assessment of functional annotation (CAFA)

by Gillis, Jesse, Pavlidis, Paul
Published 2013

Progress and challenges in the computational prediction of gene function using networks

by Pavlidis, Paul, Gillis, Jesse
Published 2012

Progress and challenges in the computational prediction of gene function using networks: 2012-2013 update

by Pavlidis, Paul, Gillis, Jesse
Published 2013

Genome-wide expression profiling of schizophrenia using a large combined cohort

by Mistry, Meeta, Gillis, Jesse, Pavlidis, Paul
Published 2012

Meta-analysis of gene coexpression networks in the post-mortem prefrontal cortex of patients with schizophrenia and unaffected controls

by Mistry, Meeta, Gillis, Jesse, Pavlidis, Paul
Published 2013

Whose sample is it anyway? Widespread misannotation of samples in transcriptomics studies

by Toker, Lilah, Feng, Min, Pavlidis, Paul
Published 2016

The path of no return—Truncated protein N‐termini and current ignorance of their genesis

by Fortelny, Nikolaus, Pavlidis, Paul, Overall, Christopher M.
Published 2015

Large-Scale Analysis of Gene Expression and Connectivity in the Rodent Brain: Insights through Data Integration

by French, Leon, Tan, Powell Patrick Cheng, Pavlidis, Paul
Published 2011

Experimental comparison and cross-validation of the Affymetrix and Illumina gene expression analysis platforms

by Barnes, Michael, Freudenberg, Johannes, Thompson, Susan, Aronow, Bruce, Pavlidis, Paul
Published 2005

ErmineJ: Tool for functional analysis of gene expression data sets

by Lee, Homin K, Braynen, William, Keshav, Kiran, Pavlidis, Paul
Published 2005

Decoding Unattended Fearful Faces with Whole-Brain Correlations: An Approach to Identify Condition-Dependent Large-Scale Functional Connectivity

by Pantazatos, Spiro P., Talati, Ardesheer, Pavlidis, Paul, Hirsch, Joy
Published 2012

Neuron-Enriched Gene Expression Patterns are Regionally Anti-Correlated with Oligodendrocyte-Enriched Patterns in the Adult Mouse and Human Brain

by Tan, Powell Patrick Cheng, French, Leon, Pavlidis, Paul
Published 2013

Application and evaluation of automated methods to extract neuroanatomical connectivity statements from free text

by French, Leon, Lane, Suzanne, Xu, Lydia, Siu, Celia, Kwok, Cathy, Chen, Yiqi, Krebs, Claudia, Pavlidis, Paul
Published 2012

Transcriptomic responses to high water temperature in two species of Pacific salmon

by Jeffries, Ken M, Hinch, Scott G, Sierocinski, Thomas, Pavlidis, Paul, Miller, Kristi M
Published 2014

miRNA and miRNA target genes in copy number variations occurring in individuals with intellectual disability

by Qiao, Ying, Badduke, Chansonette, Mercier, Eloi, Lewis, Suzanne ME, Pavlidis, Paul, Rajcan-Separovic, Evica
Published 2013

Large-scale analysis of brain-wide electrophysiological diversity reveals novel characterization of mammalian neuron types

by Tripathy, Shreejoy J, Tebaykin, Dmitry, Li, Brenna, Marcarci, Ogan, Toker, Lilah, Pavlidis, Paul
Published 2015

Text mining for neuroanatomy using WhiteText with an updated corpus and a new web application

by French, Leon, Liu, Po, Marais, Olivia, Koreman, Tianna, Tseng, Lucia, Lai, Artemis, Pavlidis, Paul
Published 2015

Meta-analysis of human methylomes reveals stably methylated sequences surrounding CpG islands associated with high gene expression

by Edgar, Rachel, Tan, Powell Patrick Cheng, Portales-Casamar, Elodie, Pavlidis, Paul
Published 2014