Atlas – a data warehouse for integrative bioinformatics

by Shah, Sohrab P, Huang, Yong, Xu, Tao, Yuen, Macaire MS, Ling, John, Ouellette, BF Francis
Published 2005

Cis-regulatory somatic mutations and gene-expression alteration in B-cell lymphomas

by Mathelier, Anthony, Lefebvre, Calvin, Zhang, Allen W, Arenillas, David J, Ding, Jiarui, Wasserman, Wyeth W, Shah, Sohrab P
Published 2015

Feature-based classifiers for somatic mutation detection in tumour–normal paired sequencing data

by Ding, Jiarui, Bashashati, Ali, Roth, Andrew, Oloumi, Arusha, Tse, Kane, Zeng, Thomas, Haffari, Gholamreza, Hirst, Martin, Marra, Marco A., Condon, Anne, Aparicio, Samuel, Shah, Sohrab P.
Published 2012

Ulysses - an application for the projection of molecular interactions across species

by Kemmer, Danielle, Huang, Yong, Shah, Sohrab P, Lim, Jonathan, Brumm, Jochen, Yuen, Macaire MS, Ling, John, Xu, Tao, Wasserman, Wyeth W, Ouellette, BF Francis
Published 2005

Pegasys: software for executing and integrating analyses of biological sequences

by Shah, Sohrab P, He, David YM, Sawkins, Jessica N, Druce, Jeffrey C, Quon, Gerald, Lett, Drew, Zheng, Grace XY, Xu, Tao, Ouellette, BF Francis
Published 2004

JointSNVMix: a probabilistic model for accurate detection of somatic mutations in normal/tumour paired next-generation sequencing data

by Roth, Andrew, Ding, Jiarui, Morin, Ryan, Crisan, Anamaria, Ha, Gavin, Giuliany, Ryan, Bashashati, Ali, Hirst, Martin, Turashvili, Gulisa, Oloumi, Arusha, Marra, Marco A., Aparicio, Samuel, Shah, Sohrab P.
Published 2012

DriverNet: uncovering the impact of somatic driver mutations on transcriptional networks in cancer

by Bashashati, Ali, Haffari, Gholamreza, Ding, Jiarui, Ha, Gavin, Lui, Kenneth, Rosner, Jamie, Huntsman, David G, Caldas, Carlos, Aparicio, Samuel A, Shah, Sohrab P
Published 2012

Type-Specific Cell Line Models for Type-Specific Ovarian Cancer Research

by Anglesio, Michael S., Wiegand, Kimberly C., Melnyk, Nataliya, Chow, Christine, Salamanca, Clara, Prentice, Leah M., Senz, Janine, Yang, Winnie, Spillman, Monique A., Cochrane, Dawn R., Shumansky, Karey, Shah, Sohrab P., Kalloger, Steve E., Huntsman, David G.
Published 2013

Correction: Type-Specific Cell Line Models for Type-Specific Ovarian Cancer Research

by Anglesio, Michael S., Wiegand, Kimberly C., Melnyk, Nataliya, Chow, Christine, Salamanca, Clara, Prentice, Leah M., Senz, Janine, Yang, Winnie, Spillman, Monique A., Cochrane, Dawn R., Shumansky, Karey, Shah, Sohrab P., Kalloger, Steve E., Huntsman, David G.
Published 2013

Correction: Type-Specific Cell Line Models for Type-Specific Ovarian Cancer Research

by Anglesio, Michael S., Wiegand, Kimberly C., Melnyk, Nataliya, Chow, Christine, Salamanca, Clara, Prentice, Leah M., Senz, Janine, Yang, Winnie, Spillman, Monique A., Cochrane, Dawn R., Shumansky, Karey, Shah, Sohrab P., Kalloger, Steve E., Huntsman, David G.
Published 2013

Systematic analysis of somatic mutations impacting gene expression in 12 tumour types

by Ding, Jiarui, McConechy, Melissa K., Horlings, Hugo M., Ha, Gavin, Chun Chan, Fong, Funnell, Tyler, Mullaly, Sarah C., Reimand, Jüri, Bashashati, Ali, Bader, Gary D., Huntsman, David, Aparicio, Samuel, Condon, Anne, Shah, Sohrab P.
Published 2015

deFuse: An Algorithm for Gene Fusion Discovery in Tumor RNA-Seq Data

by McPherson, Andrew, Hormozdiari, Fereydoun, Zayed, Abdalnasser, Giuliany, Ryan, Ha, Gavin, Sun, Mark G. F., Griffith, Malachi, Heravi Moussavi, Alireza, Senz, Janine, Melnyk, Nataliya, Pacheco, Marina, Marra, Marco A., Hirst, Martin, Nielsen, Torsten O., Sahinalp, S. Cenk, Huntsman, David, Shah, Sohrab P.
Published 2011

Distinct evolutionary trajectories of primary high-grade serous ovarian cancers revealed through spatial mutational profiling

by Bashashati, Ali, Ha, Gavin, Tone, Alicia, Ding, Jiarui, Prentice, Leah M, Roth, Andrew, Rosner, Jamie, Shumansky, Karey, Kalloger, Steve, Senz, Janine, Yang, Winnie, McConechy, Melissa, Melnyk, Nataliya, Anglesio, Michael, Luk, Margaret TY, Tse, Kane, Zeng, Thomas, Moore, Richard, Zhao, Yongjun, Marra, Marco A, Gilks, Blake, Yip, Stephen, Huntsman, David G, McAlpine, Jessica N, Shah, Sohrab P
Published 2013

Multifocal clonal evolution characterized using circulating tumour DNA in a case of metastatic breast cancer

by Murtaza, Muhammed, Dawson, Sarah-Jane, Pogrebniak, Katherine, Rueda, Oscar M., Provenzano, Elena, Grant, John, Chin, Suet-Feung, Tsui, Dana W. Y., Marass, Francesco, Gale, Davina, Ali, H. Raza, Shah, Pankti, Contente-Cuomo, Tania, Farahani, Hossein, Shumansky, Karey, Kingsbury, Zoya, Humphray, Sean, Bentley, David, Shah, Sohrab P., Wallis, Matthew, Rosenfeld, Nitzan, Caldas, Carlos
Published 2015

Identification of the epigenetic reader CBX2 as a potential drug target in advanced prostate cancer

by Clermont, Pier-Luc, Crea, Francesco, Chiang, Yan Ting, Lin, Dong, Zhang, Amy, Wang, James Z. L., Parolia, Abhijit, Wu, Rebecca, Xue, Hui, Wang, Yuwei, Ding, Jiarui, Thu, Kelsie L., Lam, Wan L., Shah, Sohrab P., Collins, Colin C., Wang, Yuzhuo, Helgason, Cheryl D.
Published 2016

Genomic analysis of a rare human tumor

by Jones, Steven JM, Laskin, Janessa, Li, Yvonne Y, Griffith, Obi L, An, Jianghong, Bilenky, Mikhail, Butterfield, Yaron S, Cezard, Timothee, Chuah, Eric, Corbett, Richard, Fejes, Anthony, Griffith, Malachi, Yee, John, Martin, Montgomery, Mayo, Michael, Melnyk, Nataliya, Morin, Ryan D, Pugh, Trevor J, Severson, Tesa, Shah, Sohrab P, Sutcliffe, Margaret, Tam, Angela, Terry, Jefferson, Thiessen, Nina, Thomson, Thomas, Varhol, Richard, Zeng, Thomas, Zhao, Yongjun, Moore, Richard A, Huntsman, David G, Birol, Inanc, Hirst, Martin, Holt, Robert A, Marra, Marco A
Published 2010

The genomic and transcriptomic architecture of 2,000 breast tumours reveals novel subgroups

by Curtis, Christina, Shah, Sohrab P., Chin, Suet-Feung, Turashvili, Gulisa, Rueda, Oscar M., Dunning, Mark J., Speed, Doug, Lynch, Andy G., Samarajiwa, Shamith, Yuan, Yinyin, Gräf, Stefan, Ha, Gavin, Haffari, Gholamreza, Bashashati, Ali, Russell, Roslin, McKinney, Steven, Langerød, Anita, Green, Andrew, Provenzano, Elena, Wishart, Gordon, Pinder, Sarah, Watson, Peter, Markowetz, Florian, Murphy, Leigh, Ellis, Ian, Purushotham, Arnie, Børresen-Dale, Anne-Lise, Brenton, James D., Tavaré, Simon, Caldas, Carlos, Aparicio, Samuel
Published 2012

Histological Transformation and Progression in Follicular Lymphoma: A Clonal Evolution Study

by Kridel, Robert, Chan, Fong Chun, Mottok, Anja, Boyle, Merrill, Farinha, Pedro, Tan, King, Meissner, Barbara, Bashashati, Ali, McPherson, Andrew, Roth, Andrew, Shumansky, Karey, Yap, Damian, Ben-Neriah, Susana, Rosner, Jamie, Smith, Maia A., Nielsen, Cydney, Giné, Eva, Telenius, Adele, Ennishi, Daisuke, Mungall, Andrew, Moore, Richard, Morin, Ryan D., Johnson, Nathalie A., Sehn, Laurie H., Tousseyn, Thomas, Dogan, Ahmet, Connors, Joseph M., Scott, David W., Steidl, Christian, Marra, Marco A., Gascoyne, Randy D., Shah, Sohrab P.
Published 2016