High depth, whole-genome sequencing of cholera isolates from Haiti and the Dominican Republic

by Sealfon, Rachel, Gire, Stephen, Ellis, Crystal, Calderwood, Stephen, Qadri, Firdausi, Hensley, Lisa, Kellis, Manolis, Ryan, Edward T, LaRocque, Regina C, Harris, Jason B, Sabeti, Pardis C
Published 2012

In vivo Ebola virus infection leads to a strong innate response in circulating immune cells

by Caballero, Ignacio S., Honko, Anna N., Gire, Stephen K., Winnicki, Sarah M., Melé, Marta, Gerhardinger, Chiara, Lin, Aaron E., Rinn, John L., Sabeti, Pardis C., Hensley, Lisa E., Connor, John H.
Published 2016

Evaluation of the Potential Impact of Ebola Virus Genomic Drift on the Efficacy of Sequence-Based Candidate Therapeutics

by Kugelman, Jeffrey R., Sanchez-Lockhart, Mariano, Andersen, Kristian G., Gire, Stephen, Park, Daniel J., Sealfon, Rachel, Lin, Aaron E., Wohl, Shirlee, Sabeti, Pardis C., Kuhn, Jens H., Palacios, Gustavo F.
Published 2015

Molecular Diagnostics for Lassa Fever at Irrua Specialist Teaching Hospital, Nigeria: Lessons Learnt from Two Years of Laboratory Operation

by Asogun, Danny A., Adomeh, Donatus I., Ehimuan, Jacqueline, Odia, Ikponmwonsa, Hass, Meike, Gabriel, Martin, Ölschläger, Stephan, Becker-Ziaja, Beate, Folarin, Onikepe, Phelan, Eric, Ehiane, Philomena E., Ifeh, Veritas E., Uyigue, Eghosasere A., Oladapo, Yemisi T., Muoebonam, Ekene B., Osunde, Osagie, Dongo, Andrew, Okokhere, Peter O., Okogbenin, Sylvanus A., Momoh, Mojeed, Alikah, Sylvester O., Akhuemokhan, Odigie C., Imomeh, Peter, Odike, Maxy A. C., Gire, Stephen, Andersen, Kristian, Sabeti, Pardis C., Happi, Christian T., Akpede, George O., Günther, Stephan
Published 2012

Enhanced methods for unbiased deep sequencing of Lassa and Ebola RNA viruses from clinical and biological samples

by Matranga, Christian B, Andersen, Kristian G, Winnicki, Sarah, Busby, Michele, Gladden, Adrianne D, Tewhey, Ryan, Stremlau, Matthew, Berlin, Aaron, Gire, Stephen K, England, Eleina, Moses, Lina M, Mikkelsen, Tarjei S, Odia, Ikponmwonsa, Ehiane, Philomena E, Folarin, Onikepe, Goba, Augustine, Kahn, S Humarr, Grant, Donald S, Honko, Anna, Hensley, Lisa, Happi, Christian, Garry, Robert F, Malboeuf, Christine M, Birren, Bruce W, Gnirke, Andreas, Levin, Joshua Z, Sabeti, Pardis C
Published 2014

Discovery of Novel Rhabdoviruses in the Blood of Healthy Individuals from West Africa

by Stremlau, Matthew H., Andersen, Kristian G., Folarin, Onikepe A., Grove, Jessica N., Odia, Ikponmwonsa, Ehiane, Philomena E., Omoniwa, Omowunmi, Omoregie, Omigie, Jiang, Pan-Pan, Yozwiak, Nathan L., Matranga, Christian B., Yang, Xiao, Gire, Stephen K., Winnicki, Sarah, Tariyal, Ridhi, Schaffner, Stephen F., Okokhere, Peter O., Okogbenin, Sylvanus, Akpede, George O., Asogun, Danny A., Agbonlahor, Dennis E., Walker, Peter J., Tesh, Robert B., Levin, Joshua Z., Garry, Robert F., Sabeti, Pardis C., Happi, Christian T.
Published 2015

Nomenclature- and Database-Compatible Names for the Two Ebola Virus Variants that Emerged in Guinea and the Democratic Republic of the Congo in 2014

by Kuhn, Jens H., Andersen, Kristian G., Baize, Sylvain, Bào, Yīmíng, Bavari, Sina, Berthet, Nicolas, Blinkova, Olga, Brister, J. Rodney, Clawson, Anna N., Fair, Joseph, Gabriel, Martin, Garry, Robert F., Gire, Stephen K., Goba, Augustine, Gonzalez, Jean-Paul, Günther, Stephan, Happi, Christian T., Jahrling, Peter B., Kapetshi, Jimmy, Kobinger, Gary, Kugelman, Jeffrey R., Leroy, Eric M., Maganga, Gael Darren, Mbala, Placide K., Moses, Lina M., Muyembe-Tamfum, Jean-Jacques, N’Faly, Magassouba, Nichol, Stuart T., Omilabu, Sunday A., Palacios, Gustavo, Park, Daniel J., Paweska, Janusz T., Radoshitzky, Sheli R., Rossi, Cynthia A., Sabeti, Pardis C., Schieffelin, John S., Schoepp, Randal J., Sealfon, Rachel, Swanepoel, Robert, Towner, Jonathan S., Wada, Jiro, Wauquier, Nadia, Yozwiak, Nathan L., Formenty, Pierre
Published 2014

Lassa Fever in Post-Conflict Sierra Leone

by Shaffer, Jeffrey G., Grant, Donald S., Schieffelin, John S., Boisen, Matt L., Goba, Augustine, Hartnett, Jessica N., Levy, Danielle C., Yenni, Rachael E., Moses, Lina M., Fullah, Mohammed, Momoh, Mambo, Fonnie, Mbalu, Fonnie, Richard, Kanneh, Lansana, Koroma, Veronica J., Kargbo, Kandeh, Ottomassathien, Darin, Muncy, Ivana J., Jones, Abigail B., Illick, Megan M., Kulakosky, Peter C., Haislip, Allyson M., Bishop, Christopher M., Elliot, Deborah H., Brown, Bethany L., Zhu, Hu, Hastie, Kathryn M., Andersen, Kristian G., Gire, Stephen K., Tabrizi, Shervin, Tariyal, Ridhi, Stremlau, Mathew, Matschiner, Alex, Sampey, Darryl B., Spence, Jennifer S., Cross, Robert W., Geisbert, Joan B., Folarin, Onikepe A., Happi, Christian T., Pitts, Kelly R., Geske, F. Jon, Geisbert, Thomas W., Saphire, Erica Ollmann, Robinson, James E., Wilson, Russell B., Sabeti, Pardis C., Henderson, Lee A., Khan, S. Humarr, Bausch, Daniel G., Branco, Luis M., Garry, Robert F.
Published 2014

Ebola Virus Epidemiology, Transmission, and Evolution during Seven Months in Sierra Leone

by Park, Daniel J., Dudas, Gytis, Wohl, Shirlee, Goba, Augustine, Whitmer, Shannon L.M., Andersen, Kristian G., Sealfon, Rachel S., Ladner, Jason T., Kugelman, Jeffrey R., Matranga, Christian B., Winnicki, Sarah M., Qu, James, Gire, Stephen K., Gladden-Young, Adrianne, Jalloh, Simbirie, Nosamiefan, Dolo, Yozwiak, Nathan L., Moses, Lina M., Jiang, Pan-Pan, Lin, Aaron E., Schaffner, Stephen F., Bird, Brian, Towner, Jonathan, Mamoh, Mambu, Gbakie, Michael, Kanneh, Lansana, Kargbo, David, Massally, James L.B., Kamara, Fatima K., Konuwa, Edwin, Sellu, Josephine, Jalloh, Abdul A., Mustapha, Ibrahim, Foday, Momoh, Yillah, Mohamed, Erickson, Bobbie R., Sealy, Tara, Blau, Dianna, Paddock, Christopher, Brault, Aaron, Amman, Brian, Basile, Jane, Bearden, Scott, Belser, Jessica, Bergeron, Eric, Campbell, Shelley, Chakrabarti, Ayan, Dodd, Kimberly, Flint, Mike, Gibbons, Aridth, Goodman, Christin, Klena, John, McMullan, Laura, Morgan, Laura, Russell, Brandy, Salzer, Johanna, Sanchez, Angela, Wang, David, Jungreis, Irwin, Tomkins-Tinch, Christopher, Kislyuk, Andrey, Lin, Michael F., Chapman, Sinead, MacInnis, Bronwyn, Matthews, Ashley, Bochicchio, James, Hensley, Lisa E., Kuhn, Jens H., Nusbaum, Chad, Schieffelin, John S., Birren, Bruce W., Forget, Marc, Nichol, Stuart T., Palacios, Gustavo F., Ndiaye, Daouda, Happi, Christian, Gevao, Sahr M., Vandi, Mohamed A., Kargbo, Brima, Holmes, Edward C., Bedford, Trevor, Gnirke, Andreas, Ströher, Ute, Rambaut, Andrew, Garry, Robert F., Sabeti, Pardis C.
Published 2015

Filovirus RefSeq Entries: Evaluation and Selection of Filovirus Type Variants, Type Sequences, and Names

by Kuhn, Jens H., Andersen, Kristian G., Bào, Yīmíng, Bavari, Sina, Becker, Stephan, Bennett, Richard S., Bergman, Nicholas H., Blinkova, Olga, Bradfute, Steven, Brister, J. Rodney, Bukreyev, Alexander, Chandran, Kartik, Chepurnov, Alexander A., Davey, Robert A., Dietzgen, Ralf G., Doggett, Norman A., Dolnik, Olga, Dye, John M., Enterlein, Sven, Fenimore, Paul W., Formenty, Pierre, Freiberg, Alexander N., Garry, Robert F., Garza, Nicole L., Gire, Stephen K., Gonzalez, Jean-Paul, Griffiths, Anthony, Happi, Christian T., Hensley, Lisa E., Herbert, Andrew S., Hevey, Michael C., Hoenen, Thomas, Honko, Anna N., Ignatyev, Georgy M., Jahrling, Peter B., Johnson, Joshua C., Johnson, Karl M., Kindrachuk, Jason, Klenk, Hans-Dieter, Kobinger, Gary, Kochel, Tadeusz J., Lackemeyer, Matthew G., Lackner, Daniel F., Leroy, Eric M., Lever, Mark S., Mühlberger, Elke, Netesov, Sergey V., Olinger, Gene G., Omilabu, Sunday A., Palacios, Gustavo, Panchal, Rekha G., Park, Daniel J., Patterson, Jean L., Paweska, Janusz T., Peters, Clarence J., Pettitt, James, Pitt, Louise, Radoshitzky, Sheli R., Ryabchikova, Elena I., Saphire, Erica Ollmann, Sabeti, Pardis C., Sealfon, Rachel, Shestopalov, Aleksandr M., Smither, Sophie J., Sullivan, Nancy J., Swanepoel, Robert, Takada, Ayato, Towner, Jonathan S., van der Groen, Guido, Volchkov, Viktor E., Volchkova, Valentina A., Wahl-Jensen, Victoria, Warren, Travis K., Warfield, Kelly L., Weidmann, Manfred, Nichol, Stuart T.
Published 2014