SNP Genotyping Identifies New Signatures of Selection in a Deep Sample of West African Plasmodium falciparum Malaria Parasites

by Amambua-Ngwa, Alfred, Park, Daniel J., Volkman, Sarah K., Barnes, Kayla G., Bei, Amy K., Lukens, Amanda K., Sene, Papa, Van Tyne, Daria, Ndiaye, Daouda, Wirth, Dyann F., Conway, David J., Neafsey, Daniel E., Schaffner, Stephen F.
Published 2012

Human cerebral malaria and Plasmodium falciparum genotypes in Malawi

by Milner, Danny A, Vareta, Jimmy, Valim, Clarissa, Montgomery, Jacqui, Daniels, Rachel F, Volkman, Sarah K, Neafsey, Daniel E, Park, Daniel J, Schaffner, Stephen F, Mahesh, Nira C, Barnes, Kayla G, Rosen, David M, Lukens, Amanda K, Van-Tyne, Daria, Wiegand, Roger C, Sabeti, Pardis C, Seydel, Karl B, Glover, Simon J, Kamiza, Steve, Molyneux, Malcolm E, Taylor, Terrie E, Wirth, Dyann F
Published 2012

Genetic Surveillance Detects Both Clonal and Epidemic Transmission of Malaria following Enhanced Intervention in Senegal

by Daniels, Rachel, Chang, Hsiao-Han, Séne, Papa Diogoye, Park, Danny C., Neafsey, Daniel E., Schaffner, Stephen F., Hamilton, Elizabeth J., Lukens, Amanda K., Van Tyne, Daria, Mboup, Souleymane, Sabeti, Pardis C., Ndiaye, Daouda, Wirth, Dyann F., Hartl, Daniel L., Volkman, Sarah K.
Published 2013

Development of a Single Nucleotide Polymorphism Barcode to Genotype Plasmodium vivax Infections

by Baniecki, Mary Lynn, Faust, Aubrey L., Schaffner, Stephen F., Park, Daniel J., Galinsky, Kevin, Daniels, Rachel F., Hamilton, Elizabeth, Ferreira, Marcelo U., Karunaweera, Nadira D., Serre, David, Zimmerman, Peter A., Sá, Juliana M., Wellems, Thomas E., Musset, Lise, Legrand, Eric, Melnikov, Alexandre, Neafsey, Daniel E., Volkman, Sarah K., Wirth, Dyann F., Sabeti, Pardis C.
Published 2015

Identification and Functional Validation of the Novel Antimalarial Resistance Locus PF10_0355 in Plasmodium falciparum

by Van Tyne, Daria, Park, Daniel J., Schaffner, Stephen F., Neafsey, Daniel E., Angelino, Elaine, Cortese, Joseph F., Barnes, Kayla G., Rosen, David M., Lukens, Amanda K., Daniels, Rachel F., Milner, Danny A., Johnson, Charles A., Shlyakhter, Ilya, Grossman, Sharon R., Becker, Justin S., Yamins, Daniel, Karlsson, Elinor K., Ndiaye, Daouda, Sarr, Ousmane, Mboup, Souleymane, Happi, Christian, Furlotte, Nicholas A., Eskin, Eleazar, Kang, Hyun Min, Hartl, Daniel L., Birren, Bruce W., Wiegand, Roger C., Lander, Eric S., Wirth, Dyann F., Volkman, Sarah K., Sabeti, Pardis C.
Published 2011

Ebola Virus Epidemiology and Evolution in Nigeria

by Folarin, Onikepe A., Ehichioya, Deborah, Schaffner, Stephen F., Winnicki, Sarah M., Wohl, Shirlee, Eromon, Philomena, West, Kendra L., Gladden-Young, Adrianne, Oyejide, Nicholas E., Matranga, Christian B., Deme, Awa Bineta, James, Ayorinde, Tomkins-Tinch, Christopher, Onyewurunwa, Kenneth, Ladner, Jason T., Palacios, Gustavo, Nosamiefan, Iguosadolo, Andersen, Kristian G., Omilabu, Sunday, Park, Daniel J., Yozwiak, Nathan L., Nasidi, Abdusallam, Garry, Robert F., Tomori, Oyewale, Sabeti, Pardis C., Happi, Christian T.
Published 2016

Discovery of Novel Rhabdoviruses in the Blood of Healthy Individuals from West Africa

by Stremlau, Matthew H., Andersen, Kristian G., Folarin, Onikepe A., Grove, Jessica N., Odia, Ikponmwonsa, Ehiane, Philomena E., Omoniwa, Omowunmi, Omoregie, Omigie, Jiang, Pan-Pan, Yozwiak, Nathan L., Matranga, Christian B., Yang, Xiao, Gire, Stephen K., Winnicki, Sarah, Tariyal, Ridhi, Schaffner, Stephen F., Okokhere, Peter O., Okogbenin, Sylvanus, Akpede, George O., Asogun, Danny A., Agbonlahor, Dennis E., Walker, Peter J., Tesh, Robert B., Levin, Joshua Z., Garry, Robert F., Sabeti, Pardis C., Happi, Christian T.
Published 2015

Ebola Virus Epidemiology, Transmission, and Evolution during Seven Months in Sierra Leone

by Park, Daniel J., Dudas, Gytis, Wohl, Shirlee, Goba, Augustine, Whitmer, Shannon L.M., Andersen, Kristian G., Sealfon, Rachel S., Ladner, Jason T., Kugelman, Jeffrey R., Matranga, Christian B., Winnicki, Sarah M., Qu, James, Gire, Stephen K., Gladden-Young, Adrianne, Jalloh, Simbirie, Nosamiefan, Dolo, Yozwiak, Nathan L., Moses, Lina M., Jiang, Pan-Pan, Lin, Aaron E., Schaffner, Stephen F., Bird, Brian, Towner, Jonathan, Mamoh, Mambu, Gbakie, Michael, Kanneh, Lansana, Kargbo, David, Massally, James L.B., Kamara, Fatima K., Konuwa, Edwin, Sellu, Josephine, Jalloh, Abdul A., Mustapha, Ibrahim, Foday, Momoh, Yillah, Mohamed, Erickson, Bobbie R., Sealy, Tara, Blau, Dianna, Paddock, Christopher, Brault, Aaron, Amman, Brian, Basile, Jane, Bearden, Scott, Belser, Jessica, Bergeron, Eric, Campbell, Shelley, Chakrabarti, Ayan, Dodd, Kimberly, Flint, Mike, Gibbons, Aridth, Goodman, Christin, Klena, John, McMullan, Laura, Morgan, Laura, Russell, Brandy, Salzer, Johanna, Sanchez, Angela, Wang, David, Jungreis, Irwin, Tomkins-Tinch, Christopher, Kislyuk, Andrey, Lin, Michael F., Chapman, Sinead, MacInnis, Bronwyn, Matthews, Ashley, Bochicchio, James, Hensley, Lisa E., Kuhn, Jens H., Nusbaum, Chad, Schieffelin, John S., Birren, Bruce W., Forget, Marc, Nichol, Stuart T., Palacios, Gustavo F., Ndiaye, Daouda, Happi, Christian, Gevao, Sahr M., Vandi, Mohamed A., Kargbo, Brima, Holmes, Edward C., Bedford, Trevor, Gnirke, Andreas, Ströher, Ute, Rambaut, Andrew, Garry, Robert F., Sabeti, Pardis C.
Published 2015