PGP: parallel prokaryotic proteogenomics pipeline for MPI clusters, high-throughput batch clusters and multicore workstations

by Tovchigrechko, Andrey, Venepally, Pratap, Payne, Samuel H.
Published 2014

NeatFreq: reference-free data reduction and coverage normalization for De Novo sequence assembly

by McCorrison, Jamison M, Venepally, Pratap, Singh, Indresh, Fouts, Derrick E, Lasken, Roger S, Methé, Barbara A
Published 2014

A bioinformatic filter for improved base-call accuracy and polymorphism detection using the Affymetrix GeneChip® whole-genome resequencing platform

by Pandya, Gagan A., Holmes, Michael H., Sunkara, Sirisha, Sparks, Andrew, Bai, Yun, Verratti, Kathleen, Saeed, Kelly, Venepally, Pratap, Jarrahi, Behnam, Fleischmann, Robert D., Peterson, Scott N.
Published 2007

Genetic Analysis Using an Isogenic Mating Pair of Aspergillus fumigatus Identifies Azole Resistance Genes and Lack of MAT Locus’s Role in Virulence

by Losada, Liliana, Sugui, Janyce A., Eckhaus, Michael A., Chang, Yun C., Mounaud, Stephanie, Figat, Abigail, Joardar, Vinita, Pakala, Suman B., Pakala, Suchitra, Venepally, Pratap, Fedorova, Natalie, Nierman, William C., Kwon-Chung, Kyung J.
Published 2015

Experimental annotation of post-translational features and translated coding regions in the pathogen Salmonella Typhimurium

by Ansong, Charles, Tolić, Nikola, Purvine, Samuel O, Porwollik, Steffen, Jones, Marcus, Yoon, Hyunjin, Payne, Samuel H, Martin, Jessica L, Burnet, Meagan C, Monroe, Matthew E, Venepally, Pratap, Smith, Richard D, Peterson, Scott N, Heffron, Fred, McClelland, Michael, Adkins, Joshua N
Published 2011

Sequence analysis of a complete 1.66 Mb Prochlorococcus marinus MED4 genome cloned in yeast

by Tagwerker, Christian, Dupont, Christopher L., Karas, Bogumil J., Ma, Li, Chuang, Ray-Yuan, Benders, Gwynedd A., Ramon, Adi, Novotny, Mark, Montague, Michael G., Venepally, Pratap, Brami, Daniel, Schwartz, Ariel, Andrews-Pfannkoch, Cynthia, Gibson, Daniel G., Glass, John I., Smith, Hamilton O., Venter, J. Craig, Hutchison, Clyde A.
Published 2012

Transcriptomic evidence for modulation of host inflammatory responses during febrile Plasmodium falciparum malaria

by Tran, Tuan M., Jones, Marcus B., Ongoiba, Aissata, Bijker, Else M., Schats, Remko, Venepally, Pratap, Skinner, Jeff, Doumbo, Safiatou, Quinten, Edwin, Visser, Leo G., Whalen, Elizabeth, Presnell, Scott, O’Connell, Elise M., Kayentao, Kassoum, Doumbo, Ogobara K., Chaussabel, Damien, Lorenzi, Hernan, Nutman, Thomas B., Ottenhoff, Tom H. M., Haks, Mariëlle C., Traore, Boubacar, Kirkness, Ewen F., Sauerwein, Robert W., Crompton, Peter D.
Published 2016

Nuclear RNA-seq of single neurons reveals molecular signatures of activation

by Lacar, Benjamin, Linker, Sara B., Jaeger, Baptiste N., Krishnaswami, Suguna, Barron, Jerika, Kelder, Martijn, Parylak, Sarah, Paquola, Apuã, Venepally, Pratap, Novotny, Mark, O'Connor, Carolyn, Fitzpatrick, Conor, Erwin, Jennifer, Hsu, Jonathan Y., Husband, David, McConnell, Michael J., Lasken, Roger, Gage, Fred H.
Published 2016

Corrigendum: Nuclear RNA-seq of single neurons reveals molecular signatures of activation

by Lacar, Benjamin, Linker, Sara B., Jaeger, Baptiste N., Krishnaswami, Suguna Rani, Barron, Jerika J., Kelder, Martijn J. E., Parylak, Sarah L., Paquola, Apuã C. M., Venepally, Pratap, Novotny, Mark, O'Connor, Carolyn, Fitzpatrick, Conor, Erwin, Jennifer A., Hsu, Jonathan Y., Husband, David, McConnell, Michael J., Lasken, Roger, Gage, Fred H.
Published 2016