Bioinformatic challenges for proteomic biomarkers of cancer

by Tabb, David L, Liebler, Daniel C
Published 2011

Enabling proteomics-based identification of human cancer variations

by Li, Jing, Ma, Zeqiang, Slebos, Robbert JC, Tabb, David L, Liebler, Daniel C, Zhang, Bing
Published 2010

Corrigendum: Proteomic analysis of colon and rectal carcinoma using standard and customized databases

by Slebos, Robbert J.C., Wang, Xia, Wang, Xiaojing, Zhang, Bing, Tabb, David L., Liebler, Daniel C.
Published 2015

Proteomic analysis of colon and rectal carcinoma using standard and customized databases

by Slebos, Robbert J.C., Wang, Xia, Wang, Xaojing, Zhang, Bing, Tabb, David L., Liebler, Daniel C.
Published 2015

Correcting systematic bias and instrument measurement drift with mzRefinery

by Gibbons, Bryson C., Chambers, Matthew C., Monroe, Matthew E., Tabb, David L., Payne, Samuel H.
Published 2015

QC Metrics from CPTAC Raw LC-MS/MS Data Interpreted through Multivariate Statistics

by Wang, Xia, Chambers, Matthew C., Vega-Montoto, Lorenzo J., Bunk, David M., Stein, Stephen E., Tabb, David L.
Published 2014

proBAMsuite, a Bioinformatics Framework for Genome-Based Representation and Analysis of Proteomics Data*

by Wang, Xiaojing, Slebos, Robbert J. C., Chambers, Matthew C., Tabb, David L., Liebler, Daniel C., Zhang, Bing
Published 2016

Basophile: Accurate Fragment Charge State Prediction Improves Peptide Identification Rates

by Wang, Dong, Dasari, Surendra, Chambers, Matthew C., Holman, Jerry D., Chen, Kan, Liebler, Daniel C., Orton, Daniel J., Purvine, Samuel O., Monroe, Matthew E., Chung, Chang Y., Rose, Kristie L., Tabb, David L.
Published 2013

Recognizing millions of consistently unidentified spectra across hundreds of shotgun proteomics datasets

by Griss, Johannes, Perez-Riverol, Yasset, Lewis, Steve, Tabb, David L., Dianes, José A., del-Toro, Noemi, Rurik, Marc, Walzer, Mathias W., Kohlbacher, Oliver, Hermjakob, Henning, Wang, Rui, Vizcaíno, Juan Antonio
Published 2016

Wavelet-Based Peak Detection and a New Charge Inference Procedure for MS/MS Implemented in ProteoWizard’s msConvert

by French, William R., Zimmerman, Lisa J., Schilling, Birgit, Gibson, Bradford W., Miller, Christine A., Townsend, R. Reid, Sherrod, Stacy D., Goodwin, Cody R., McLean, John A., Tabb, David L.
Published 2014

Neurovascular unit on a chip: implications for translational applications

by Alcendor, Donald J, Block III, Frank E, Cliffel, David E, Daniels, John Scott, Ellacott, Kate LJ, Goodwin, Cody R, Hofmeister, Lucas H, Li, Deyu, Markov, Dmitry A, May, Jody C, McCawley, Lisa J, McLaughlin, BethAnn, McLean, John A, Niswender, Kevin D, Pensabene, Virginia, Seale, Kevin T, Sherrod, Stacy D, Sung, Hak-Joon, Tabb, David L, Webb, Donna J, Wikswo, John P
Published 2013

A Cross-platform Toolkit for Mass Spectrometry and Proteomics

by Chambers, Matthew C., Maclean, Brendan, Burke, Robert, Amodei, Dario, Ruderman, Daniel L, Neumann, Steffen, Gatto, Laurent, Fischer, Bernd, Pratt, Brian, Egertson, Jarrett, Hoff, Katherine, Kessner, Darren, Tasman, Natalie, Shulman, Nicholas, Frewen, Barbara, Baker, Tahmina A., Brusniak, Mi-Youn, Paulse, Christopher, Creasy, David, Flashner, Lisa, Kani, Kian, Moulding, Chris, Seymour, Sean L., Nuwaysir, Lydia M., Lefebvre, Brent, Kuhlmann, Frank, Roark, Joe, Rainer, Paape, Detlev, Suckau, Hemenway, Tina, Huhmer, Andreas, Langridge, James, Connolly, Brian, Chadick, Trey, Holly, Krisztina, Eckels, Josh, Deutsch, Eric W., Moritz, Robert L, Katz, Jonathan E., Agus, David B., MacCoss, Michael, Tabb, David L., Mallick, Parag
Published 2012

Reproducibility of Differential Proteomic Technologies in CPTAC Fractionated Xenografts

by Tabb, David L., Wang, Xia, Carr, Steven A., Clauser, Karl R., Mertins, Philipp, Chambers, Matthew C., Holman, Jerry D., Wang, Jing, Zhang, Bing, Zimmerman, Lisa J., Chen, Xian, Gunawardena, Harsha P., Davies, Sherri R., Ellis, Matthew J. C., Li, Shunqiang, Townsend, R. Reid, Boja, Emily S., Ketchum, Karen A., Kinsinger, Christopher R., Mesri, Mehdi, Rodriguez, Henry, Liu, Tao, Kim, Sangtae, McDermott, Jason E., Payne, Samuel H., Petyuk, Vladislav A., Rodland, Karin D., Smith, Richard D., Yang, Feng, Chan, Daniel W., Zhang, Bai, Zhang, Hui, Zhang, Zhen, Zhou, Jian-Ying, Liebler, Daniel C.
Published 2015